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home2.php
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<?php
require "phplib/genlibraries.php";
redirectOutside();
?>
<?php require "htmlib/header.inc.php"; ?>
<body class="page-header-fixed page-sidebar-closed-hide-logo page-content-white page-container-bg-solid">
<div class="page-wrapper">
<?php require "htmlib/top.inc.php"; ?>
<?php require "htmlib/menu.inc.php"; ?>
<!-- BEGIN CONTENT -->
<div class="page-content-wrapper">
<!-- BEGIN CONTENT BODY -->
<div class="page-content">
<!-- BEGIN PAGE HEADER-->
<!-- BEGIN PAGE BAR -->
<div class="page-bar">
<ul class="page-breadcrumb">
<li>
<span>User Workspace</span>
<i class="fa fa-circle"></i>
</li>
<li>
<span>Data Table</span>
</li>
</ul>
</div>
<!-- END PAGE BAR -->
<!-- BEGIN PAGE TITLE-->
<h1 class="page-title"> User Workspace
<small>manage data through the data table</small>
</h1>
<!-- END PAGE TITLE-->
<!-- END PAGE HEADER-->
<div class="row">
<div class="col-md-12">
<p style="margin-top:0;">
If you want apply a Tool to a file, please select it from the dropdown menu on the Tools column. If you need to apply a Tool
to more than one file, check the selected files and they will be loaded in the <i>Run Tools</i> list at the bottom of the table.
</p>
<?php if($_SESSION['User']['Type'] == 100) { ?>
<div class="alert alert-warning">
Your request for a premium user account is being processed. In the meantime, you can use the platform as a common user.
</div>
<?php }else if($_SESSION['User']['Type'] == 3) { ?>
<div class="alert alert-info">
As a guest user you have reduced functionalities in the platform.
</div>
<?php } ?>
<!-- BEGIN EXAMPLE TABLE PORTLET -->
<div class="portlet">
<div class="portlet-body">
<form name="gesdir" action="datamanager/workspace.php" method="post" enctype="multipart/form-data">
<table id="workspace" class="display" cellspacing="0" width="100%">
<thead>
<tr class="heading">
<th>
<a href="home.php" style="float:left;text-decoration:none;" title="refresh table">
<span class="refresh-table"></span>
</a>
</th>
<th>File
<div id="mock_button1" class="mock_button"></div>
</th>
<th>Format
<div id="mock_button2" class="mock_button"></div>
</th>
<th>Project
<div id="mock_button3" class="mock_button"></div>
</th>
<th>Date
<div id="mock_button4" class="mock_button"></div>
</th>
<th>Size
<div id="mock_button5" class="mock_button"></div>
</th>
<th>Tools</th>
<th>Actions</th>
<!-- COLUMNES AUXILIARS D'ORDENACIÓ -->
<th>OrderNAME</th>
<th>OrderDATE</th>
<th>OrderSIZE</th>
</tr>
<tr id="headerSearch">
<th style="background-color: #eee;padding:3px;">
<label class="mt-checkbox mt-checkbox-single mt-checkbox-outline" style="margin-left:7px;">
<input type="checkbox" class="group-checkable" data-set="#workspace .checkboxes" />
<span style="background-color:#fff;"></span>
</label>
</th>
<th style="background-color: #eee;padding:3px;" class="inputSearch">File</th>
<th style="background-color: #eee;padding:3px;" class="selector">Format</th>
<th style="background-color: #eee;padding:3px;" class="selector">Project</th>
<th style="background-color: #eee;"></th>
<th style="background-color: #eee;"></th>
<th style="background-color: #eee;"></th>
<th style="background-color: #eee;">
<a class="clearState" data-column="0" style="text-decoration:none;margin-left:-8px">
<button class="btn btn-xs green dropdown-toggle" type="button" data-toggle="dropdown" aria-expanded="false">
<i class="fa fa-times-circle"></i> Clear filters
</button>
</a>
</th>
</tr>
</thead>
<tbody>
<tr data-tt-id="1">
<td>
<label class="mt-checkbox mt-checkbox-single mt-checkbox-outline">
<input type="checkbox" class="checkboxes foldercheck" value="1" />
<span></span>
</label>
</td>
<td>uploads</td>
<td> </td>
<td>uploads</td>
<td>2016/05/31 13:30</td>
<td>165.1 M</td>
<td> </td>
<td>
<div class="btn-group">
<button class="btn btn-xs green dropdown-toggle" type="button" data-toggle="dropdown" aria-expanded="false"> Actions
<i class="fa fa-angle-down"></i>
</button>
<ul class="dropdown-menu pull-center" role="menu">
<li>
<a href="javascript:;">
<i class="fa fa-trash-o"></i> Delete folder </a>
</li>
<li>
<a href="javascript:;">
<i class="fa fa-file-zip-o"></i> Compress</a>
</li>
</ul>
</div>
</td>
<td>-1000</td>
<td>2</td>
<td>3</td>
</tr>
<tr data-tt-id="1.1" data-tt-parent-id="1">
<td>
<label class="mt-checkbox mt-checkbox-single mt-checkbox-outline">
<input type="checkbox" class="checkboxes" value="1" onchange="changeCheckbox(this)" />
<span></span>
</label>
</td>
<td>V126.CpG_calls.bw <span class="expand_info" onclick="expandInfo(this)"></span>
<div class="extra_info">
<table>
<tr>
<td>Description:</td>
<td>BAM file for DNA methylation study</td>
</tr>
<tr>
<td>Reference genome:</td>
<td>R64-1-1</td>
</tr>
<tr>
<td>BAM properties:</td>
<td>paired sorted</td>
</tr>
</table>
</div>
</td>
<td>BW</td>
<td>uploads</td>
<td>2016/05/31 13:30</td>
<td>617.71 K</td>
<td>
<div class="btn-group">
<button class="btn btn-xs blue-oleo dropdown-toggle" type="button" data-toggle="dropdown" aria-expanded="false"> Tools
<i class="fa fa-angle-down"></i>
</button>
<ul class="dropdown-menu pull-center" role="menu">
<li>
<a href="javascript:;">
<i class="fa fa-motorcycle"></i> Nucleosome Dynamics</a>
</li>
<li>
<a href="javascript:;">
<i class="fa fa-database"></i> BigNASim</a>
</li>
<li>
<a href="javascript:;">
<i class="fa fa-puzzle-piece"></i> Protein-DNA docking</a>
</li>
</ul>
</div>
</td>
<td>
<div class="btn-group">
<button class="btn btn-xs green dropdown-toggle" type="button" data-toggle="dropdown" aria-expanded="false"> Actions
<i class="fa fa-angle-down"></i>
</button>
<ul class="dropdown-menu pull-center" role="menu">
<li>
<a href="javascript:;">
<i class="fa fa-pencil"></i> Edit file metadata </a>
</li>
<li>
<a href="javascript:;">
<i class="fa fa-download"></i> Download file </a>
</li>
<li>
<a href="javascript:;">
<i class="fa fa-trash-o"></i> Delete file </a>
</li>
<li>
<a href="javascript:;">
<i class="fa fa-file-zip-o"></i> Compress</a>
</li>
</ul>
</div>
</td>
<td>1</td>
<td>2</td>
<td>3</td>
</tr>
<tr data-tt-id="1.2" data-tt-parent-id="1">
<td>
<label class="mt-checkbox mt-checkbox-single mt-checkbox-outline">
<input type="checkbox" class="checkboxes" value="1" onchange="changeCheckbox(this)" />
<span></span>
</label>
</td>
<td>PP_120502_34.bam.log</td>
<td>BAM</td>
<td>uploads</td>
<td>2016/04/27 21:31</td>
<td>3.37 K</td>
<td>
<div class="btn-group">
<button class="btn btn-xs blue-oleo dropdown-toggle" type="button" data-toggle="dropdown" aria-expanded="false"> Tools
<i class="fa fa-angle-down"></i>
</button>
<ul class="dropdown-menu pull-center" role="menu">
<li>
<a href="javascript:;">
<i class="fa fa-motorcycle"></i> Nucleosome Dynamics</a>
</li>
<li>
<a href="javascript:;">
<i class="fa fa-database"></i> BigNASim</a>
</li>
<li>
<a href="javascript:;">
<i class="fa fa-puzzle-piece"></i> Protein-DNA docking</a>
</li>
</ul>
</div>
</td>
<td>
<div class="btn-group">
<button class="btn btn-xs green dropdown-toggle" type="button" data-toggle="dropdown" aria-expanded="false"> Actions
<i class="fa fa-angle-down"></i>
</button>
<ul class="dropdown-menu pull-center" role="menu">
<li>
<a href="javascript:;">
<i class="fa fa-pencil"></i> Edit file metadata </a>
</li>
<li>
<a href="javascript:;">
<i class="fa fa-download"></i> Download file </a>
</li>
<li>
<a href="javascript:;">
<i class="fa fa-trash-o"></i> Delete file </a>
</li>
<li>
<a href="javascript:;">
<i class="fa fa-file-zip-o"></i> Compress</a>
</li>
</ul>
</div>
</td>
<td>1</td>
<td>2</td>
<td>3</td>
</tr>
<tr data-tt-id="1.3" data-tt-parent-id="1">
<td>
<label class="mt-checkbox mt-checkbox-single mt-checkbox-outline">
<input type="checkbox" class="checkboxes" value="1" onchange="changeCheckbox(this)" />
<span></span>
</label>
</td>
<td>PP_120502_SN365_B_L002_GGM-34.bam.log</td>
<td>LOG</td>
<td>uploads</td>
<td>2016/04/26 16:55</td>
<td>4.01 K</td>
<td>
<div class="btn-group">
<button class="btn btn-xs blue-oleo dropdown-toggle" type="button" data-toggle="dropdown" aria-expanded="false"> Tools
<i class="fa fa-angle-down"></i>
</button>
<ul class="dropdown-menu pull-center" role="menu">
<li>
<a href="javascript:;">
<i class="fa fa-motorcycle"></i> Nucleosome Dynamics</a>
</li>
<li>
<a href="javascript:;">
<i class="fa fa-database"></i> BigNASim</a>
</li>
<li>
<a href="javascript:;">
<i class="fa fa-puzzle-piece"></i> Protein-DNA docking</a>
</li>
</ul>
</div>
</td>
<td><div class="btn-group">
<button class="btn btn-xs green dropdown-toggle" type="button" data-toggle="dropdown" aria-expanded="false"> Actions
<i class="fa fa-angle-down"></i>
</button>
<ul class="dropdown-menu pull-center" role="menu">
<li>
<a href="javascript:;">
<i class="fa fa-pencil"></i> Edit file metadata </a>
</li>
<li>
<a href="javascript:;">
<i class="fa fa-download"></i> Download file </a>
</li>
<li>
<a href="javascript:;">
<i class="fa fa-trash-o"></i> Delete file </a>
</li>
<li>
<a href="javascript:;">
<i class="fa fa-file-zip-o"></i> Compress</a>
</li>
</ul>
</div>
</td>
<td>1</td>
<td>2</td>
<td>3</td>
</tr>
<tr data-tt-id="1.4" data-tt-parent-id="1">
<td>
<label class="mt-checkbox mt-checkbox-single mt-checkbox-outline">
<input type="checkbox" class="checkboxes" value="1" onchange="changeCheckbox(this)" />
<span></span>
</label>
</td>
<td>120502_35.bam</td>
<td>BAM</td>
<td>uploads</td>
<td>2016/04/05 09:55</td>
<td>74.34 M</td>
<td>
<div class="btn-group">
<button class="btn btn-xs blue-oleo dropdown-toggle" type="button" data-toggle="dropdown" aria-expanded="false"> Tools
<i class="fa fa-angle-down"></i>
</button>
<ul class="dropdown-menu pull-center" role="menu">
<li>
<a href="javascript:;">
<i class="fa fa-motorcycle"></i> Nucleosome Dynamics</a>
</li>
<li>
<a href="javascript:;">
<i class="fa fa-database"></i> BigNASim</a>
</li>
<li>
<a href="javascript:;">
<i class="fa fa-puzzle-piece"></i> Protein-DNA docking</a>
</li>
</ul>
</div>
</td>
<td>
<div class="btn-group">
<button class="btn btn-xs green dropdown-toggle" type="button" data-toggle="dropdown" aria-expanded="false"> Actions
<i class="fa fa-angle-down"></i>
</button>
<ul class="dropdown-menu pull-center" role="menu">
<li>
<a href="javascript:;">
<i class="fa fa-pencil"></i> Edit file metadata </a>
</li>
<li>
<a href="javascript:;">
<i class="fa fa-download"></i> Download file </a>
</li>
<li>
<a href="javascript:;">
<i class="fa fa-trash-o"></i> Delete file </a>
</li>
<li>
<a href="javascript:;">
<i class="fa fa-file-zip-o"></i> Compress</a>
</li>
</ul>
</div>
</td>
<td>1</td>
<td>2</td>
<td>3</td>
</tr>
<tr data-tt-id="1.5" data-tt-parent-id="1">
<td>
<label class="mt-checkbox mt-checkbox-single mt-checkbox-outline">
<input type="checkbox" class="checkboxes" value="1" onchange="changeCheckbox(this)" />
<span></span>
</label>
</td>
<td>120502_SN365_B_L002_GGM-35_sort_PART.bam.gz</td>
<td>BAM</td>
<td>uploads</td>
<td>2016/02/10 12:11</td>
<td>75.73 K</td>
<td>
<div class="btn-group">
<button class="btn btn-xs blue-oleo dropdown-toggle" type="button" data-toggle="dropdown" aria-expanded="false"> Tools
<i class="fa fa-angle-down"></i>
</button>
<ul class="dropdown-menu pull-center" role="menu">
<li>
<a href="javascript:;">
<i class="fa fa-motorcycle"></i> Nucleosome Dynamics</a>
</li>
<li>
<a href="javascript:;">
<i class="fa fa-database"></i> BigNASim</a>
</li>
<li>
<a href="javascript:;">
<i class="fa fa-puzzle-piece"></i> Protein-DNA docking</a>
</li>
</ul>
</div>
</td>
<td>
<div class="btn-group">
<button class="btn btn-xs green dropdown-toggle" type="button" data-toggle="dropdown" aria-expanded="false"> Actions
<i class="fa fa-angle-down"></i>
</button>
<ul class="dropdown-menu pull-center" role="menu">
<li>
<a href="javascript:;">
<i class="fa fa-pencil"></i> Edit file metadata </a>
</li>
<li>
<a href="javascript:;">
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</div>
</td>
<td>1</td>
<td>2</td>
<td>3</td>
</tr>
<tr data-tt-id="1.6" data-tt-parent-id="1">
<td>
<label class="mt-checkbox mt-checkbox-single mt-checkbox-outline">
<input type="checkbox" class="checkboxes" value="1" onchange="changeCheckbox(this)" />
<span></span>
</label>
</td>
<td>120502_SN365_B_L002_GGM-35_sort_PART.bam</td>
<td>BAM</td>
<td>uploads</td>
<td>2016/02/10 12:11</td>
<td>75.73 K</td>
<td>
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</td>
<td>
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</div>
</td>
<td>1</td>
<td>2</td>
<td>3</td>
</tr>
<tr data-tt-id="1.7" data-tt-parent-id="1">
<td>
<label class="mt-checkbox mt-checkbox-single mt-checkbox-outline">
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<td>120502_SN365_B_L002_GGM-35_sort_PART.bam</td>
<td>BAM</td>
<td>uploads</td>
<td>2016/04/22 15:20</td>
<td>75.65 K</td>
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</td>
<td>
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</div>
</td>
<td>1</td>
<td>2</td>
<td>3</td>
</tr>
<tr data-tt-id="1.8" data-tt-parent-id="1">
<td>
<label class="mt-checkbox mt-checkbox-single mt-checkbox-outline">
<input type="checkbox" class="checkboxes" value="1" onchange="changeCheckbox(this)" />
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</td>
<td>120502_34.bam</td>
<td>BAM</td>
<td>uploads</td>
<td>2016/02/10 12:11</td>
<td>90.01 M</td>
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</td>
<td>
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</ul>
</div>
</td>
<td>1</td>
<td>2</td>
<td>3</td>
</tr>
<tr data-tt-id="2">
<td>
<label class="mt-checkbox mt-checkbox-single mt-checkbox-outline">
<input type="checkbox" class="checkboxes foldercheck" value="1" />
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</label>
</td>
<td>run001</td>
<td> </td>
<td>run001</td>
<td>2017/05/31 13:30</td>
<td>10.47 M</td>
<td> </td>
<td>
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</div>
</td>
<td>-1000</td>
<td>3</td>
<td>1</td>
</tr>
<tr data-tt-id="2.1" data-tt-parent-id="2">
<td>
<label class="mt-checkbox mt-checkbox-single mt-checkbox-outline">
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<td>ND_120502_35-120502M_34.gff</td>
<td>GFF</td>
<td>run001</td>
<td>2017/04/27 15:16</td>
<td>9.64 M</td>
<td>
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<li>
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</td>
<td>
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</div>
</td>
<td>1</td>
<td>3</td>
<td>1</td>
</tr>
<tr data-tt-id="2.2" data-tt-parent-id="2">
<td>
<label class="mt-checkbox mt-checkbox-single mt-checkbox-outline">
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</td>
<td>P_120502M_34.gff<span class="expand_info" onclick="expandInfo(this)"></span>
<div class="extra_info">
<table>
<tr>
<td>Description:</td>
<td>BAM file for DNA methylation study</td>
</tr>
<tr>
<td>Reference genome:</td>
<td>R64-1-1</td>
</tr>
<tr>
<td>BAM properties:</td>
<td>paired sorted</td>
</tr>
</table>
</div>
</td>
<td>GFF</td>
<td>run001</td>
<td>2017/04/27 09:43</td>
<td>831.09 K</td>
<td>
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</td>
<td>
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</div>
</td>
<td>1</td>
<td>3</td>
<td>1</td>
</tr>
<tr data-tt-id="3">
<td>
<label class="mt-checkbox mt-checkbox-single mt-checkbox-outline">
<input type="checkbox" class="checkboxes foldercheck" value="1" />
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</td>
<td>cellcycle</td>
<td> </td>
<td>cellcycle</td>
<td>2015/05/31 13:30</td>
<td>14.47 M</td>
<td> </td>
<td>
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</div>
</td>
<td>-1000</td>
<td>1</td>
<td>2</td>
</tr>
<tr data-tt-id="3.1" data-tt-parent-id="3">
<td>
<label class="mt-checkbox mt-checkbox-single mt-checkbox-outline">
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</td>
<td>A_120502_35-120502M_34.gff</td>
<td>ZIP</td>
<td>cellcycle</td>
<td>2015/04/27 15:16</td>
<td>13.64 M</td>
<td>
<div class="btn-group">
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<a href="javascript:runTool(2, 1, 'A_120502_35-120502M_34.gff');">
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</td>
<td>
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</div>
</td>
<td>1</td>
<td>1</td>
<td>2</td>
</tr>
<tr data-tt-id="3.2" data-tt-parent-id="3">
<td>
<label class="mt-checkbox mt-checkbox-single mt-checkbox-outline">
<input type="checkbox" class="checkboxes" value="1" onchange="changeCheckbox(this)" />
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</td>
<td>Z_120502M_34.gff <span class="expand_info" onclick="expandInfo(this)"></span>
<div class="extra_info">
<table>
<tr>
<td>Description:</td>
<td>BAM file for DNA methylation study</td>
</tr>
<tr>
<td>Reference genome:</td>
<td>R64-1-1</td>
</tr>
<tr>
<td>BAM properties:</td>
<td>paired sorted</td>
</tr>
</table>
</div>
</td>
<td>GFF</td>
<td>cellcycle</td>
<td>2015/04/27 09:43</td>
<td>831.09 K</td>
<td>
<div class="btn-group">
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</button>
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<li>
<a href="javascript:;">
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</div>
</td>
<td>
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