diff --git a/PW30_2019_GranCanaria/Projects/Data-glove_for_virtual_operations/20190201_095221.gif b/PW30_2019_GranCanaria/Projects/Data-glove_for_virtual_operations/20190201_095221.gif deleted file mode 100644 index d32a0e3ca..000000000 Binary files a/PW30_2019_GranCanaria/Projects/Data-glove_for_virtual_operations/20190201_095221.gif and /dev/null differ diff --git a/PW30_2019_GranCanaria/Projects/Data-glove_for_virtual_operations/README.md b/PW30_2019_GranCanaria/Projects/Data-glove_for_virtual_operations/README.md index f5889b690..0a8d68ac1 100644 --- a/PW30_2019_GranCanaria/Projects/Data-glove_for_virtual_operations/README.md +++ b/PW30_2019_GranCanaria/Projects/Data-glove_for_virtual_operations/README.md @@ -46,7 +46,7 @@ We built a data-glove that tracks hand movements. Our goal is to connect it to S Result: -![Result](20190201_095221.gif) +![Result](https://github.com/NA-MIC/ProjectWeek/releases/download/project-week-resources/PW30__Data-glove_for_virtual_operations__20190201_095221.gif) # Background and References diff --git a/PW36_2022_Virtual/Projects/TMRCatheterNavigation/README.md b/PW36_2022_Virtual/Projects/TMRCatheterNavigation/README.md index 751406af6..0a164d259 100644 --- a/PW36_2022_Virtual/Projects/TMRCatheterNavigation/README.md +++ b/PW36_2022_Virtual/Projects/TMRCatheterNavigation/README.md @@ -48,7 +48,7 @@ A vessel model will be reconstructed from a preoperative 3D CT. During the opera ![Experimental setup](img1.png) ![Experimental setup](img2.png) -![Experimental setup](video.gif) +![Experimental setup](https://github.com/NA-MIC/ProjectWeek/releases/download/project-week-resources/PW36__TMRCatheterNavigation__video.gif) # Background and References diff --git a/PW36_2022_Virtual/Projects/TMRCatheterNavigation/video.gif b/PW36_2022_Virtual/Projects/TMRCatheterNavigation/video.gif deleted file mode 100644 index 6a7a072b4..000000000 Binary files a/PW36_2022_Virtual/Projects/TMRCatheterNavigation/video.gif and /dev/null differ diff --git a/PW37_2022_Virtual/Projects/SlicerTMS/README.md b/PW37_2022_Virtual/Projects/SlicerTMS/README.md index 7c8a6a542..a43a5240b 100644 --- a/PW37_2022_Virtual/Projects/SlicerTMS/README.md +++ b/PW37_2022_Virtual/Projects/SlicerTMS/README.md @@ -44,7 +44,7 @@ Real-time visualization of an electric field (E-field) for transcranial magnetic #### Coil moving and updating the electric field on the brain surface inside slicer: -Brain surface coil moving +Brain surface coil moving #### Started WebSocket Tests: we can interact with the red, green and yellow slices with the new websocket connection: diff --git a/PW37_2022_Virtual/Projects/SlicerTMS/tms_vis.gif b/PW37_2022_Virtual/Projects/SlicerTMS/tms_vis.gif deleted file mode 100644 index db1eb6ecc..000000000 Binary files a/PW37_2022_Virtual/Projects/SlicerTMS/tms_vis.gif and /dev/null differ diff --git a/PW37_2022_Virtual/Projects/StreamlinedROIAnnotationTool/FinalROITool_1.gif b/PW37_2022_Virtual/Projects/StreamlinedROIAnnotationTool/FinalROITool_1.gif deleted file mode 100644 index 5448af856..000000000 Binary files a/PW37_2022_Virtual/Projects/StreamlinedROIAnnotationTool/FinalROITool_1.gif and /dev/null differ diff --git a/PW37_2022_Virtual/Projects/StreamlinedROIAnnotationTool/README.md b/PW37_2022_Virtual/Projects/StreamlinedROIAnnotationTool/README.md index 9a9e1423b..f2633ca87 100644 --- a/PW37_2022_Virtual/Projects/StreamlinedROIAnnotationTool/README.md +++ b/PW37_2022_Virtual/Projects/StreamlinedROIAnnotationTool/README.md @@ -55,6 +55,7 @@ as possible. and image information back to server. ## Next Steps + 1. Need to add scoring functionality (DONE) 2. Need to add way to mark image as defective (DONE) 3. Need to add way to clear Previously added ROIs (DONE w/help from erikz) @@ -65,6 +66,7 @@ as possible. # Illustrations +

@@ -72,8 +74,10 @@ as possible. Demo video from start of project: ![](SimplifiedROITool.gif) ![](roi-web-tool-example.gif) + Demo video from end of project: -![](FinalROITool_1.gif) +![](https://github.com/NA-MIC/ProjectWeek/releases/download/project-week-resources/PW37__StreamlinedROIAnnotationTool__FinalROITool_1.gif) + # Background and References diff --git a/PW38_2023_GranCanaria/Projects/KaapanaFastViewingAndTaggingOfDICOMImages/NA-MIC.gif b/PW38_2023_GranCanaria/Projects/KaapanaFastViewingAndTaggingOfDICOMImages/NA-MIC.gif deleted file mode 100644 index 7d280ecf4..000000000 Binary files a/PW38_2023_GranCanaria/Projects/KaapanaFastViewingAndTaggingOfDICOMImages/NA-MIC.gif and /dev/null differ diff --git a/PW38_2023_GranCanaria/Projects/KaapanaFastViewingAndTaggingOfDICOMImages/README.md b/PW38_2023_GranCanaria/Projects/KaapanaFastViewingAndTaggingOfDICOMImages/README.md index 2a8dfd6dc..b894a34de 100644 --- a/PW38_2023_GranCanaria/Projects/KaapanaFastViewingAndTaggingOfDICOMImages/README.md +++ b/PW38_2023_GranCanaria/Projects/KaapanaFastViewingAndTaggingOfDICOMImages/README.md @@ -18,7 +18,7 @@ https://drive.google.com/file/d/1A7-8Ru0uTJHFFa17rZtkBpvNhJao_F7x/view?usp=share Creating a cohort or tagging DICOM images is a very time-consuming and error-prone procedure. In this project, we are extending the functionality of the so-called Gallery View within Kaapana. -![](NA-MIC.gif) +![](https://github.com/NA-MIC/ProjectWeek/releases/download/project-week-resources/PW38__KaapanaFastViewingAndTaggingOfDICOMImages__NA-MIC.gif) ## Approach and Plan @@ -55,4 +55,4 @@ tbd # Background and References -https://github.com/kaapana/kaapana \ No newline at end of file +https://github.com/kaapana/kaapana diff --git a/PW38_2023_GranCanaria/Projects/MONAILabel2bundle/README.md b/PW38_2023_GranCanaria/Projects/MONAILabel2bundle/README.md index ff402eac6..806342843 100644 --- a/PW38_2023_GranCanaria/Projects/MONAILabel2bundle/README.md +++ b/PW38_2023_GranCanaria/Projects/MONAILabel2bundle/README.md @@ -67,12 +67,14 @@ Figure 1 - Full CT segmentation on subject from spleen decathalon data Figure 2 - Comparison on spleen decathalon data of the MONAI full CT segmentation bundle we created (left) to the output TotalSegmentator produces (right) [monai_bundle_vs_total_seg_spleen.webm](https://user-images.githubusercontent.com/59979551/216606510-047a0105-17ca-4765-8186-4132edf2c0e9.webm) +![](https://github.com/NA-MIC/ProjectWeek/releases/download/project-week-resources/PW38__MONAILabel2bundle__monai_bundle_vs_total_seg_spleen.gif) Figure 3 - Full CT segmentation on subject from IDC ![02_03_23_full_ct_segmentation_success_idc](https://user-images.githubusercontent.com/59979551/216612414-649813e5-945b-4719-aaa8-8954aeb44d18.JPG) Figure 4 - Comparison on IDC data of the MONAI full CT segmentation bundle we created (left) to the output TotalSegmentator produces (right) [monai_bundle_vs_total_seg_idc.webm](https://user-images.githubusercontent.com/59979551/216612449-013d7dad-7bc6-43b0-9780-0c9f9b848007.webm) +![](https://github.com/NA-MIC/ProjectWeek/releases/download/project-week-resources/PW38__MONAILabel2bundle__monai_bundle_vs_total_seg_idc.gif) ## Discussion notes diff --git a/PW38_2023_GranCanaria/Projects/MONAILabel2bundle/monai_bundle_vs_total_seg_idc.gif b/PW38_2023_GranCanaria/Projects/MONAILabel2bundle/monai_bundle_vs_total_seg_idc.gif deleted file mode 100644 index e27898ef7..000000000 Binary files a/PW38_2023_GranCanaria/Projects/MONAILabel2bundle/monai_bundle_vs_total_seg_idc.gif and /dev/null differ diff --git a/PW38_2023_GranCanaria/Projects/MONAILabel2bundle/monai_bundle_vs_total_seg_spleen.gif b/PW38_2023_GranCanaria/Projects/MONAILabel2bundle/monai_bundle_vs_total_seg_spleen.gif deleted file mode 100644 index 8c5fb9bd4..000000000 Binary files a/PW38_2023_GranCanaria/Projects/MONAILabel2bundle/monai_bundle_vs_total_seg_spleen.gif and /dev/null differ diff --git a/PW38_2023_GranCanaria/Projects/MultiSpectralSensorIntegration/README.md b/PW38_2023_GranCanaria/Projects/MultiSpectralSensorIntegration/README.md index f7a657acb..b82d7625f 100644 --- a/PW38_2023_GranCanaria/Projects/MultiSpectralSensorIntegration/README.md +++ b/PW38_2023_GranCanaria/Projects/MultiSpectralSensorIntegration/README.md @@ -45,8 +45,8 @@ The set of cameras to integrate includes (but not limited to): visible light USB ![Some more images](Example2.jpg) --> Fig. 1: Integration of Thermal Expert EV2 & PCO Ultraviolet Cameras (OpenIGTLink) -[TEEV2PCOUV-2.gif](https://github.com/NA-MIC/ProjectWeek/blob/master/PW38_2023_GranCanaria/Projects/MultiSpectralSensorIntegration/TEEV2PCOUV-2.gif) -
+[TEEV2PCOUV-2.gif](https://github.com/NA-MIC/ProjectWeek/releases/download/project-week-resources/PW38__MultiSpectralSensorIntegration__TEEV2PCOUV-2.gif) +
# Background and References diff --git a/PW38_2023_GranCanaria/Projects/MultiSpectralSensorIntegration/TEEV2PCOUV-2.gif b/PW38_2023_GranCanaria/Projects/MultiSpectralSensorIntegration/TEEV2PCOUV-2.gif deleted file mode 100644 index 476f916b2..000000000 Binary files a/PW38_2023_GranCanaria/Projects/MultiSpectralSensorIntegration/TEEV2PCOUV-2.gif and /dev/null differ