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script running slowly #3

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rajitz opened this issue Jan 20, 2020 · 1 comment
Open

script running slowly #3

rajitz opened this issue Jan 20, 2020 · 1 comment

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@rajitz
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rajitz commented Jan 20, 2020

Hi, I'm running DeviCNV with BAM files from 60 samples, and the very first step "STEP1_calculateReadsDepthOfAmp" is taking ~3 days per sample. Each BAM file is around 2 GB. Is this runtime to be expected?

Can the script perhaps be parallelized to make it run faster?

Thanks very much,
Rajat
@rajitz
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rajitz commented Jan 20, 2020

Fyi, there are a total of 67003 Amplicons

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