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Some GATK < 4 processes are still present in documentation and config files. #633

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alneberg opened this issue Sep 4, 2018 · 1 comment
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2 tasks done

Some GATK < 4 processes are still present in documentation and config files. #633

alneberg opened this issue Sep 4, 2018 · 1 comment
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@alneberg
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alneberg commented Sep 4, 2018 •
edited by maxulysse
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Describe the bug
These processes are still present in documentation and configuration:

  • IndelRealigner
  • RealignerTargetCreator

There might be other removed processes that are still left in the documentation/configuration. I will have a look at this when I get time.
@alneberg alneberg changed the title The IndelRealigner process is still present in documentation Some GATK < 4 processes are still present in documentation and config files. Sep 4, 2018
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I think I manage to catch some in the docs, I'll make another pass, on my next PR regarding the docs, as I already fund some stuff forgotten...

@maxulysse maxulysse mentioned this issue Sep 10, 2018
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@maxulysse maxulysse self-assigned this Sep 19, 2018
jherrero referenced this issue in UCL-BLIC/Sarek_v2.2.1 Apr 11, 2019
@maxulysse
fix nf-core#633
67b1876
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