From de98795d3dd27e2193068326e225c92cc2bbf7f4 Mon Sep 17 00:00:00 2001 From: Maxime Garcia Date: Tue, 23 Oct 2018 15:21:23 +0200 Subject: [PATCH 1/2] fix expected output of PullSingularityContainers process --- buildContainers.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/buildContainers.nf b/buildContainers.nf index c5706dc981..197a6f5a5d 100644 --- a/buildContainers.nf +++ b/buildContainers.nf @@ -92,7 +92,7 @@ process PullSingularityContainers { val container from singularityContainers output: - file("${container}-${params.tag}.img") into imagePulled + file("${container}-${params.tag}.simg") into imagePulled when: params.singularity From f071960ff115514da666ff020ff8e33226b16f37 Mon Sep 17 00:00:00 2001 From: Maxime Garcia Date: Tue, 23 Oct 2018 15:30:32 +0200 Subject: [PATCH 2/2] update CHANGELOG [skip ci] --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 51aa88fd9d..74489cbc6a 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -14,6 +14,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. ### `Fixed` - [#665](https://github.com/SciLifeLab/Sarek/pull/665) - Input bam file now has always the same name (whether it is from a single fastq pair or multiple) in the MarkDuplicates process, so metrics too +- [#672](https://github.com/SciLifeLab/Sarek/pull/672) - process `PullSingularityContainers` from `buildContainers.nf` now expect a file with the correct `.simg` extension for singularity images, and no longer the `.img` one. ## [2.2.1] - 2018-10-04