From 66e6913bc48f80ff75558a8fe337fd19bfbc65e3 Mon Sep 17 00:00:00 2001 From: Evan Bolyen Date: Tue, 28 Jul 2020 13:41:48 -0600 Subject: [PATCH] BUG: fix newline handling (#59) --- genome_sampler/plugin_setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/genome_sampler/plugin_setup.py b/genome_sampler/plugin_setup.py index 818919b..f64c421 100644 --- a/genome_sampler/plugin_setup.py +++ b/genome_sampler/plugin_setup.py @@ -171,7 +171,7 @@ def _4(fmt: GISAIDDNAFASTAFormat) -> DNASequencesDirectoryFormat: @plugin.register_transformer def _5(fmt: VCFLikeMaskFormat) -> pd.DataFrame: - with io.StringIO(''.join(fmt.to_list())) as fh: + with io.StringIO('\n'.join(fmt.to_list())) as fh: df = pd.read_csv(fh, sep='\t') df = df.rename(columns={'#CHROM': 'CHROM'}) return df