How to calculate overall Precision, Recall and F1 with these values of 14 categories?

[murphylmf]

Hello. I'm appreciated at your excellent work in this paper. But when I'm trying to calculate precision, Recall and F1, I don't know how
do you calculate these values.

Can you tell me how do you calculate the overall precision, recall and F1 in Table 3 after calculating these values related to each of the 14 categories?

I get these values with the code at https://github.com/MIT-LCP/mimic-cxr/blob/master/txt/validation/compare_negbio_and_chexpert.ipynb
Looking forward to your reply!

[murphylmf]

And by the way, do you calculate these value with the "mention" method at https://github.com/MIT-LCP/mimic-cxr/blob/master/txt/validation/compare_negbio_and_chexpert.ipynb
?

which means that any word related to a certain category is counted no matter it is positive, negative or uncertain?

[wlufy]

Hello, do you know how to calculate them now? Thank you!

[catfish132]

I have the same question, did anyone know it?

[Otiss-pang]

I also have the same problem, have you solven this problem?