setup.py

#!/usr/bin/env python
from setuptools import setup, Extension, find_packages
from distutils import sysconfig
import glob
import sys

srcs = [x for x in glob.glob("deeptoolsintervals/tree/*.c")]

libs = ["z"]
if sysconfig.get_config_vars('BLDLIBRARY') is not None:
    # Note the "-l" prefix!
    for e in sysconfig.get_config_vars('BLDLIBRARY')[0].split():
        if e[0:2] == "-l":
            libs.append(e[2:])
elif sys.version_info[0] >= 3 and sys.version_info[1] >= 3:
    libs.append("python%i.%im" % (sys.version_info[0], sys.version_info[1]))
else:
    libs.append("python%i.%i" % (sys.version_info[0], sys.version_info[1]))

additional_libs = [sysconfig.get_config_var("LIBDIR"), sysconfig.get_config_var("LIBPL")]

module1 = Extension('deeptoolsintervals.tree',
                    sources=srcs,
                    libraries=libs,
                    library_dirs=additional_libs,
                    include_dirs=[sysconfig.get_config_var("INCLUDEPY")])

setup(name='deeptoolsintervals',
      version='0.1.9',
      description='A python module creating/accessing GTF-based interval trees with associated meta-data',
      author="Devon P. Ryan",
      author_email="ryan@ie-freiburg.mpg.de",
      url="https://github.com/deeptools/deeptools_intervals",
      keywords=["bioinformatics", "GTF"],
      classifier=["Development Status :: 5 - Production/Stable",
                  "Environment :: Console",
                  "License :: OSI Approved :: MIT License",
                  "Intended Audience :: Developers",
                  "Programming Language :: C",
                  "Programming Language :: Python",
                  "Programming Language :: Python :: 2",
                  "Programming Language :: Python :: 2.7",
                  "Programming Language :: Python :: 3",
                  "Programming Language :: Python :: 3.3",
                  "Programming Language :: Python :: 3.4",
                  "Programming Language :: Python :: 3.5",
                  "Programming Language :: Python :: 3.6",
                  "Programming Language :: Python :: Implementation :: CPython",
                  "Operating System :: POSIX",
                  "Operating System :: Unix",
                  "Operating System :: MacOS",
                  "Topic :: Scientific/Engineering"],
      packages=find_packages(),
      zip_safe=False,
      include_package_data=True,
      ext_modules=[module1])