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Error in rule combine_postprocessing_csv #236

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sabdelrazek opened this issue Mar 7, 2023 · 0 comments
Open

Error in rule combine_postprocessing_csv #236

sabdelrazek opened this issue Mar 7, 2023 · 0 comments

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@sabdelrazek
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I received this error when I run python -m charcoal run myproject.conf -j 4 report. Any help with that please?
Error in rule combine_postprocessing_csv:
jobid: 72
output: output.newproject/stage2_summary.csv
shell:

    python -m charcoal.combine_csvs --sort-by remove_kb --reverse              > output.newproject/stage2_summary.csv

    (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)
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