From 6c807532933c0394c2338bc52ce3cf5a73f82cfe Mon Sep 17 00:00:00 2001 From: Amy He Date: Sun, 29 Sep 2024 15:14:58 -0700 Subject: [PATCH] drop capping phosphate from ambiguous --- meeko/data/residue_chem_templates.json | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/meeko/data/residue_chem_templates.json b/meeko/data/residue_chem_templates.json index d5c383a7..52e475eb 100644 --- a/meeko/data/residue_chem_templates.json +++ b/meeko/data/residue_chem_templates.json @@ -1,13 +1,13 @@ { "ambiguous": { - "A": ["A", "A3", "A5p", "A5", "p"], - "U": ["U", "U3", "U5p", "U5", "p"], - "C": ["C", "C3", "C5p", "C5", "p"], - "G": ["G", "G3", "G5p", "G5", "p"], - "DA": ["DA", "DA3", "DA5p", "DA5", "p"], - "DT": ["DT", "DT3", "DT5p", "DT5", "p"], - "DC": ["DC", "DC3", "DC5p", "DC5", "p"], - "DG": ["DG", "DG3", "DG5p", "DG5", "p"], + "A": ["A", "A3", "A5p", "A5"], + "U": ["U", "U3", "U5p", "U5"], + "C": ["C", "C3", "C5p", "C5"], + "G": ["G", "G3", "G5p", "G5"], + "DA": ["DA", "DA3", "DA5p", "DA5"], + "DT": ["DT", "DT3", "DT5p", "DT5"], + "DC": ["DC", "DC3", "DC5p", "DC5"], + "DG": ["DG", "DG3", "DG5p", "DG5"], "HIS": ["HIE", "HID", "HIP", "NHIE", "NHID", "NHIP", "CHIE", "CHID", "CHIP"], "CYS": ["CYS", "CYX", "CYX-", "NCYS", "NCYX", "NCYX-", "CCYS", "CCYX", "CCYX-"], "CYX": [ "CYX", "CYX-", "NCYX", "NCYX-", "CCYX", "CCYX-"],