update-triples-script.sh

#!/bin/bash

wget --no-check-certificate -q https://raw.githubusercontent.com/identifiers-org/ontop/refs/heads/main/idorg-ontology/idorg-ontology-materialized.rdf
wget --no-check-certificate -q https://raw.githubusercontent.com/identifiers-org/ontop/refs/heads/main/idorg-ontology/idorg-ontology.ttl
wget --no-check-certificate -q https://raw.githubusercontent.com/identifiers-org/ontop/refs/heads/main/idorg-ontology/idorg-ontology.obda
ontop materialize --db-user "$ONTOP_DB_USER" --db-password "$ONTOP_DB_PASSWORD" --db-url "$ONTOP_DB_URL" -m ./idorg-ontology.obda -t ./idorg-ontology.ttl -o ./new-idorg-ontology-materialized.rdf -p /dev/null
if ! diff -q new-idorg-ontology-materialized.rdf idorg-ontology-materialized.rdf > /dev/null; then
    echo Updating materialized file

    echo -n "{\"message\":\"Sync triples with database [skip ci]\", \"committer\":{\"name\":\"Sync bot\", \"email\":\"identifiers-org@ebi.ac.uk\"}, \"content\":\"" > datafile
    cat new-idorg-ontology-materialized.rdf|base64 >> datafile
    old_sha=$(wget --no-check-certificate -O - -q https://api.github.com/repos/identifiers-org/ontop/contents/idorg-ontology/idorg-ontology-materialized.rdf | grep sha | cut -d\" -f4)
    echo "\", \"sha\": \"$old_sha\"}" >> datafile

    curl -X PUT --insecure \
         -H "Accept: application/vnd.github+json" \
         -H "Authorization: Bearer $ONTOP_GH_TOKEN" \
         -H "X-GitHub-Api-Version: 2022-11-28" \
         --data @./datafile \
         https://api.github.com/repos/identifiers-org/ontop/contents/idorg-ontology/idorg-ontology-materialized.rdf
 else
    echo No need to update materialized file
 fi