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MANIFEST
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admin/make-predef-track-docs.sh
admin/makePredefTrackDocs.pl
admin/makeWebsiteImages.pl
bin/circleator
bin/rasterize-svg
BUGS
Build.PL
ChangeLog
conf/brewer.txt
conf/clovr-microbe/fig-1-multiple-contigs.cfg
conf/clovr-microbe/fig-1-small.cfg
conf/clovr-microbe/fig-1.cfg
conf/genes-percentGC-GCskew-1.cfg
conf/predefined-tracks.cfg
data/AE003852-AE003853-2.gff3
data/AE003852-AE003853.gbk
data/AE003852-AE003853.gff3
data/AE003852.gbk
data/AE003853.gbk
data/CM000961-180bp-seq.fsa
data/CM000961-180bp.gbk
data/CM000961-no-seq.gbk
data/CM000961-seq.fsa
data/CM000961.gbk
data/NC_011969.gbk
INSTALL
lib/Circleator/Config/Config.pm
lib/Circleator/Config/Perl.pm
lib/Circleator/Config/Standard.pm
lib/Circleator/CoordTransform/CoordTransform.pm
lib/Circleator/CoordTransform/Identity.pm
lib/Circleator/CoordTransform/LinearScale.pm
lib/Circleator/FeatFunction/Color/expression_level.pm
lib/Circleator/FeatFunction/Color/regex_list.pm
lib/Circleator/FeatFunction/Color/snp_text.pm
lib/Circleator/FeatFunction/Color/snp_type.pm
lib/Circleator/FeatFunction/Color/snp_type_no_indel.pm
lib/Circleator/FeatFunction/Color/trf_microsat_var.pm
lib/Circleator/FeatFunction/Label/accession.pm
lib/Circleator/FeatFunction/Label/bsr_count.pm
lib/Circleator/FeatFunction/Label/display_name.pm
lib/Circleator/FeatFunction/Label/genomic_seq.pm
lib/Circleator/FeatFunction/Label/id.pm
lib/Circleator/FeatFunction/Label/length_bp.pm
lib/Circleator/FeatFunction/Label/length_kb.pm
lib/Circleator/FeatFunction/Label/locus.pm
lib/Circleator/FeatFunction/Label/position.pm
lib/Circleator/FeatFunction/Label/primary_id.pm
lib/Circleator/FeatFunction/Label/product.pm
lib/Circleator/FeatFunction/Label/rRNA_product.pm
lib/Circleator/FeatFunction/Label/snp_base.pm
lib/Circleator/FeatFunction/Label/snp_gene_id.pm
lib/Circleator/FeatFunction/Label/snp_product.pm
lib/Circleator/FeatFunction/Label/snp_ref_base.pm
lib/Circleator/FeatFunction/Label/tag.pm
lib/Circleator/FeatFunction/Label/trf_microsat_var.pm
lib/Circleator/FeatFunction/Numeric/allelic_depth.pm
lib/Circleator/Packer/LinePacker.pm
lib/Circleator/Packer/PackerI.pm
lib/Circleator/Parser/BSR.pm
lib/Circleator/Parser/Expression_Table.pm
lib/Circleator/Parser/Gene_Cluster_Table.pm
lib/Circleator/Parser/SNP.pm
lib/Circleator/Parser/SNP_MergedTable.pm
lib/Circleator/Parser/SNP_Skirret.pm
lib/Circleator/Parser/SNP_Table.pm
lib/Circleator/Parser/TRF.pm
lib/Circleator/Parser/TRF_variation.pm
lib/Circleator/Parser/VCF.pm
lib/Circleator/SeqFunction/BAMCoverage.pm
lib/Circleator/SeqFunction/FeatFunctionAdapter.pm
lib/Circleator/SeqFunction/FlatFile.pm
lib/Circleator/SeqFunction/GCSkew.pm
lib/Circleator/SeqFunction/PercentGC.pm
lib/Circleator/SeqFunction/SeqFunction.pm
lib/Circleator/Util/Colors.pm
lib/Circleator/Util/Deserts.pm
lib/Circleator/Util/GraphRegions.pm
lib/Circleator/Util/Graphs.pm
lib/Circleator/Util/Loop.pm
lib/Circleator/Util/SignatureFilter.pm
lib/Circleator/Util/Tracks.pm
LICENSE
MANIFEST This list of files
NOTES.md
README.md
t/circleator.t
t/conf/AE003852-AE003853-contigs-and-gaps-1.cfg
t/conf/AE003852-AE003853-contigs-and-gaps-2.cfg
t/conf/AE003852-AE003853-gff-1.cfg
t/conf/AE003852-AE003853-list-1.txt
t/conf/AE003852-AE003853-list-2.txt
t/conf/AE003852-AE003853-list-3.txt
t/conf/AE003852-AE003853-list-4.txt
t/conf/AE003852-AE003853-list-5.txt
t/conf/AE003852-AE003853-loops-1.cfg
t/conf/AE003852-AE003853-loops-2.cfg
t/conf/AE003852-AE003853-loops-3.cfg
t/conf/AE003853-AE003853-contigs-and-gaps-1.cfg
t/conf/AE003853-AE003853-list-1.txt
t/conf/CM000961-180bp-graphs-1.cfg
t/conf/CM000961-180bp-graphs-2.cfg
t/conf/CM000961-180bp-heat-maps-1.cfg
t/conf/CM000961-180bp-line-graphs-1.cfg
t/conf/CM000961-180bp-off-by-one-1.cfg
t/conf/CM000961-180bp-off-by-one-2.cfg
t/conf/CM000961-180bp-off-by-one-with-scaling-1.cfg
t/conf/CM000961-scaling-1.cfg
t/conf/heat-maps-1.cfg
t/conf/labels-1.cfg
t/conf/logo-1.cfg
t/conf/logo-2.cfg
t/conf/nav-circle-sel-docs.cfg
t/conf/nav-circle-sel-gallery.cfg
t/conf/nav-circle-sel-home.cfg
t/conf/nav-circle-sel-software.cfg
t/conf/nav-circle.cfg
t/conf/NC_011969-scaling-1.cfg
t/conf/predef-tracks-1.cfg
t/conf/predef-tracks-2.cfg
t/conf/predef-tracks-3.cfg
t/conf/rulers-1.cfg
t/conf/rulers-2.cfg
t/conf/rulers-3.cfg
t/conf/tracks-1.cfg
t/results/AE003852-AE003853-AE003852-AE003853-contigs-and-gaps-1.svg
t/results/AE003852-AE003853-AE003852-AE003853-gff-1.svg
t/results/AE003852-AE003853-AE003852-AE003853-loops-1.svg
t/results/AE003852-AE003853-AE003852-AE003853-loops-2.svg
t/results/AE003852-AE003853-AE003852-AE003853-loops-3.svg
t/results/AE003852-AE003853-list-1-AE003852-AE003853-contigs-and-gaps-1.svg
t/results/AE003852-AE003853-list-2-AE003852-AE003853-contigs-and-gaps-1.svg
t/results/AE003852-AE003853-list-3-AE003852-AE003853-contigs-and-gaps-1.svg
t/results/AE003852-AE003853-list-4-AE003852-AE003853-contigs-and-gaps-2.svg
t/results/AE003852-AE003853-list-5-AE003852-AE003853-contigs-and-gaps-2.svg
t/results/AE003853-AE003853-list-1-AE003853-AE003853-contigs-and-gaps-1.svg
t/results/CM000961-180bp-CM000961-180bp-graphs-1.svg
t/results/CM000961-180bp-CM000961-180bp-graphs-2.svg
t/results/CM000961-180bp-CM000961-180bp-heat-maps-1.svg
t/results/CM000961-180bp-CM000961-180bp-line-graphs-1.svg
t/results/CM000961-180bp-CM000961-180bp-off-by-one-1.svg
t/results/CM000961-180bp-CM000961-180bp-off-by-one-2.svg
t/results/CM000961-180bp-CM000961-180bp-off-by-one-with-scaling-1.svg
t/results/CM000961-180bp-labels-1.svg
t/results/CM000961-180bp-logo-1.svg
t/results/CM000961-180bp-logo-2.svg
t/results/CM000961-180bp-nav-circle-sel-docs.svg
t/results/CM000961-180bp-nav-circle-sel-gallery.svg
t/results/CM000961-180bp-nav-circle-sel-home.svg
t/results/CM000961-180bp-nav-circle-sel-software.svg
t/results/CM000961-180bp-nav-circle.svg
t/results/CM000961-180bp-predef-tracks-1.svg
t/results/CM000961-180bp-predef-tracks-2.svg
t/results/CM000961-180bp-predef-tracks-3.svg
t/results/CM000961-180bp-rulers-1.svg
t/results/CM000961-180bp-rulers-2.svg
t/results/CM000961-180bp-rulers-3.svg
t/results/CM000961-180bp-seq-CM000961-180bp-off-by-one-1.svg
t/results/CM000961-180bp-tracks-1.svg
t/results/CM000961-CM000961-scaling-1.svg
t/results/CM000961-genes-percentGC-GCskew-1.svg
t/results/CM000961-heat-maps-1.svg
t/results/CM000961-labels-1.svg
t/results/CM000961-no-seq-predef-tracks-2.svg
t/results/CM000961-predef-tracks-1.svg
t/results/CM000961-predef-tracks-2.svg
t/results/CM000961-predef-tracks-3.svg
t/results/CM000961-rulers-1.svg
t/results/CM000961-rulers-2.svg
t/results/CM000961-rulers-3.svg
t/results/CM000961-tracks-1.svg
t/results/NC_011969-labels-1.svg
t/results/NC_011969-NC_011969-scaling-1.svg
t/results/NC_011969-predef-tracks-1.svg
t/results/NC_011969-predef-tracks-2.svg
t/results/NC_011969-predef-tracks-3.svg
t/results/NC_011969-rulers-1.svg
t/results/NC_011969-rulers-2.svg
t/results/NC_011969-rulers-3.svg
t/results/NC_011969-tracks-1.svg