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Restrict zarr and tifffile versions (#237)
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Tifffile's zarr integration doesn't support zarr 3, and we are
using a tifffile feature that's been discontinued in the
latest version. This change restricts those packages'
versions to compatible ones, as provides in the installation
instructions in the README and documentation.
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jmuhlich authored Feb 21, 2025
1 parent d1c1ba7 commit f4f623c
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -105,7 +105,7 @@ conda activate ashlar

In the activated environment, install dependencies and ashlar itself:
```bash
conda install -y -c conda-forge numpy scipy matplotlib networkx scikit-image scikit-learn tifffile zarr pyjnius blessed
conda install -y -c conda-forge numpy scipy matplotlib networkx scikit-image scikit-learn "tifffile<2025.2.18" "zarr<3" pyjnius blessed
pip install ashlar
```

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2 changes: 1 addition & 1 deletion docs/instructions/installation.md
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Expand Up @@ -34,7 +34,7 @@ conda activate ashlar

In the activated environment, install dependencies and ashlar itself:
```bash
conda install -y -c conda-forge numpy scipy matplotlib networkx scikit-image scikit-learn tifffile zarr pyjnius blessed
conda install -y -c conda-forge numpy scipy matplotlib networkx scikit-image scikit-learn "tifffile<2025.2.18" "zarr<3" pyjnius blessed
pip install ashlar
```

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