Update bioformats dependency to 8.0.1 #231
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This also changes from the deprecated loci_tools.jar to bioformats_package.jar
Previously we called enableLogging, but under the latest bioformats that emits one DEBUG-level message during internal logging setup. This message contains a stack trace from an internally caught exception which looks extra-scary even though it's irrelevant. Now we use setRootLevel which suppresses even that message.
Bioformats 6.4.0 added an explicit correction for the stage y-axis.
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Closes #229 #138