DESCRIPTION

Package: derfinderPlot
Type: Package
Title: Plotting functions for derfinder
Version: 1.41.0
Date: 2021-11-22
Authors@R: c(person("Leonardo", "Collado-Torres", role = c("aut", "cre"), email
    = "lcolladotor@gmail.com", comment = c(ORCID = "0000-0003-2140-308X")),
    person(c("Andrew", "E."), "Jaffe", role = "aut",
    email = "andrew.jaffe@libd.org", comment = c(ORCID = "0000-0001-6886-1454")),
    person(c("Jeffrey", "T."), "Leek", role = c("aut", "ths"),
    email = "jtleek@gmail.com", comment = c(ORCID = "0000-0002-2873-2671")))
Depends:
    R(>= 3.2)
Imports:
    derfinder (>= 1.1.0),
    GenomeInfoDb (>= 1.3.3),
    GenomicFeatures,
    GenomicRanges (>= 1.17.40),
    ggbio (>= 1.13.13),
    ggplot2,
    graphics,
    grDevices,
    IRanges (>= 1.99.28),
    limma,
    methods,
    plyr,
    RColorBrewer,
    reshape2,
    S4Vectors (>= 0.9.38),
    scales,
    utils
Suggests:
    biovizBase (>= 1.27.2),
    bumphunter (>= 1.7.6),
    derfinderData (>= 0.99.0),
    sessioninfo,
    knitr (>= 1.6),
    BiocStyle (>= 2.5.19),
    org.Hs.eg.db,
    RefManageR,
    rmarkdown (>= 0.3.3),
    testthat,
    TxDb.Hsapiens.UCSC.hg19.knownGene,
    covr
VignetteBuilder: knitr
Description: This package provides plotting functions for results from the
    derfinder package. This helps separate the graphical dependencies
    required for making these plots from the core functionality of derfinder.
License: Artistic-2.0
LazyData: false
URL: https://github.com/leekgroup/derfinderPlot
BugReports: https://support.bioconductor.org/t/derfinderPlot
biocViews: DifferentialExpression, Sequencing, RNASeq, Software, Visualization, ImmunoOncology
RoxygenNote: 7.2.3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)