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Bug fix #1

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Bug fix #1

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Purpose/implementation Section

What changes are being implemented in this Pull Request?

There's a GitHub permissions change that needs to be added here and on every OTTR repo.

It has to do with changes GitHub made. It should fix the error on the checks on jhudsl#634

cansavvy and others added 2 commits May 2, 2023 14:07
* Edit the git config steps

* Update pull_request.yml

* Update starting-course.yml

* Update send-updates.yml

* Update test-send-updates.yml

* Seeing what's going on

* Update pull_request.yml

* Crazy curly brackets

* Just kidding with the curly braces

* Update .github/workflows/send-updates.yml

Co-authored-by: AM Hoffman <[email protected]>

* Update .github/workflows/test-send-updates.yml

Co-authored-by: AM Hoffman <[email protected]>

* Update .github/workflows/starting-course.yml

Co-authored-by: AM Hoffman <[email protected]>

* Update .github/workflows/render-all.yml

Co-authored-by: AM Hoffman <[email protected]>

* Update .github/workflows/pull_request.yml

Co-authored-by: AM Hoffman <[email protected]>

---------

Co-authored-by: avahoffman <[email protected]>
* Update render-all.yml

* Update starting-course.yml
malachig and others added 27 commits May 12, 2023 21:04
* Add to config_automation.yml

* Add make_book_txt option to render-all

* Add as.logical() for proper conversion of "true"

* add quotes
* Make an "old version" to test this

* Try a git fetch first

* Try another strategy
* Make an "old version" to test this

* Try a git fetch first

* Try another strategy

* Try committing after the delete

* Try git fetch origin

* git push --set-upstream origin/main

* git push -u
Enrolled PracticalGenomics/cogaps-on-sciserver repository for OTTR updates
adding AI course to sync
cansavvy and others added 30 commits August 1, 2024 12:03
add Intro to Python
added repo to list for updates
adding small updates to links in the itn about this course section and the description
* Update send-updates.yml

* Update update-enrollment.md
* Update check-url.yml

* Update 02-chapter_of_course.Rmd

* Update check-url.yml

* Update 02-chapter_of_course.Rmd
* Delete make_screenshots.R

* rm make_screenshots.R
* Update CONTRIBUTING.md

Update description of repos given today's OTTR knowledge transfer meeting

* Update CONTRIBUTING.md

link cheatsheets repo
* Try this out

* ${secrets.GH_PAT}

* Update README

* ${{ secrets. }}

* Fix secrets

* adding readability reports

* Markdown

* indent

* Will this work?

* Try it out

* Fix image:

* Try not fetch-depth: 0

* Try not actually on the docker image

* Try this way

* Try once more

* markdownlint-cli2

* Update linter

* continue-on-error: true

* Try this out

* echo it

* Delete for now
Update sync.yml with intermediate python
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