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[Obsolete] all the OMIM susceptibilities #8725

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nicolevasilevsky opened this issue Feb 15, 2025 · 0 comments
Open

[Obsolete] all the OMIM susceptibilities #8725

nicolevasilevsky opened this issue Feb 15, 2025 · 0 comments
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obsolete This includes both obsolete and merge requests on list Added to the obosletion or merge candidate list.

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nicolevasilevsky commented Feb 15, 2025

Mondo term (ID and Label)
all the OMIM susceptibilities

Reason for deprecation

But dealing with issues like this places a burden on us and delivers zero value to Mondo users:
#7827

If we go forward with this- it would be great to clean up all the susceptibility synonyms that are on terms too. For example:

[Term]
id: MONDO:0005090
name: schizophrenia
def: "A major psychotic disorder characterized by abnormalities in the perception or expression of reality. It affects the cognitive and psychomotor functions. Common clinical signs and symptoms include delusions, hallucinations, disorganized thinking, and retreat from reality." [NCIT:P378]
subset: otar {source="MONDO:OTAR"}
synonym: "schizoaffective disorder" RELATED []
synonym: "schizophrenia" EXACT CLINGEN_LABEL [DOID:5419, icd11.foundation:1683919430, MONDO:ambiguous, MONDO:Lexical, NCIT:C3362, OMIM:181500]
synonym: "schizophrenia (disease)" EXACT [https://orcid.org/0000-0002-6601-2165]
synonym: "schizophrenia 12" BROAD []
synonym: "schizophrenia with or without an affective disorder" RELATED []
synonym: "schizophrenia, susceptibility to" RELATED []
synonym: "schizophrenia-1" EXACT [DOID:5419]
synonym: "SCZD" RELATED ABBREVIATION [MONDO:Lexical]
xref: DOID:5419 {source="EFO:0000692", source="MONDO:equivalentTo"}
xref: HP:0100753 {source="MONDO:otherHierarchy", source="DOID:5419"}
xref: ICD10CM:F20-F29 {source="https://github.com/monarch-initiative/mondo/issues/4536", source="https://orcid.org/0000-0001-5208-3432", source="https://orcid.org/0000-0002-4142-7153"}
xref: icd11.foundation:1683919430 {source="MONDO:equivalentTo"}
xref: ICD9:295 {source="EFO:0000692"}
xref: ICD9:295.8 {source="EFO:0000692", source="DOID:5419"}
xref: ICD9:295.80 {source="MONDO:relatedTo", source="MONDO:i2s", source="DOID:5419"}
xref: ICD9:295.85 {source="EFO:0000692"}
xref: ICD9:295.9 {source="EFO:0000692"}
xref: ICD9:295.90 {source="MONDO:equivalentTo", source="MONDO:i2s"}
xref: MEDGEN:48574 {source="MONDO:equivalentTo", source="MONDO:MEDGEN"}
xref: MESH:D012559 {source="EFO:0000692", source="DOID:5419"}
xref: NCIT:C3362 {source="EFO:0000692", source="MONDO:equivalentTo"}
xref: NIFSTD:birnlex_2104 {source="EFO:0000692"}
xref: OMIM:181500 {source="EFO:0000692", source="MONDO:equivalentTo", source="DOID:5419"}
xref: Orphanet:3140 {source="MONDO:equivalentObsolete"}
xref: SCTID:58214004 {source="EFO:0000692", source="MONDO:equivalentTo"}
xref: UMLS:C0036341 {source="MEDGEN:48574", source="MONDO:equivalentTo", source="MONDO:MEDGEN"}
is_a: MONDO:0005485 {source="DOID:5419", source="https://orcid.org/0000-0002-6601-2165"} ! psychotic disorder
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/4521" xsd:anyURI
property_value: IAO:0000589 "schizophrenia (disease)" xsd:string
@nicolevasilevsky nicolevasilevsky added obsolete This includes both obsolete and merge requests on list Added to the obosletion or merge candidate list. labels Feb 15, 2025
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