From c7d5df6b2c12c935505e7e54d38649897e2d13b3 Mon Sep 17 00:00:00 2001
From: Ethan Blackwood <ethanbblackwood@gmail.com>
Date: Tue, 22 Oct 2024 00:01:05 -0400
Subject: [PATCH] Use F order when reshaping masks (#321)

---
 mesmerize_core/caiman_extensions/cnmf.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/mesmerize_core/caiman_extensions/cnmf.py b/mesmerize_core/caiman_extensions/cnmf.py
index 653ea9d..e1df330 100644
--- a/mesmerize_core/caiman_extensions/cnmf.py
+++ b/mesmerize_core/caiman_extensions/cnmf.py
@@ -227,7 +227,7 @@ def get_masks(
         masks = np.zeros(shape=(dims[0], dims[1], len(component_indices)), dtype=bool)
 
         for n, ix in enumerate(component_indices):
-            s = cnmf_obj.estimates.A[:, ix].toarray().reshape(cnmf_obj.dims)
+            s = cnmf_obj.estimates.A[:, ix].toarray().reshape(cnmf_obj.dims, order='F')
             s[s >= threshold] = 1
             s[s < threshold] = 0