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nf-core / fetchngs Public

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Fix failing tests

dsl2-plus

768702d

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nf-core CI on: pull_request 161

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modules/nf-core/sratools/prefetch/tests/main.nf.test | 24.10.2 | docker

workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test | 24.10.2 | docker

modules/local/sra_runinfo_to_ftp/tests/main.nf.test | 24.10.2 | docker

subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test | 24.10.2 | docker

subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test | 24.10.2 | docker

modules/local/aspera_cli/tests/main.nf.test | 24.10.2 | docker

subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test | 24.10.2 | docker

modules/nf-core/sratools/fasterqdump/tests/main.nf.test | 24.10.2 | docker

subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_completion.nf.test | 24.10.2 | docker

workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test | 24.10.2 | docker

modules/local/sra_ids_to_runinfo/tests/main.nf.test | 24.10.2 | docker

modules/local/sra_to_samplesheet/tests/main.nf.test | 24.10.2 | docker

subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_initialisation.nf.test | 24.10.2 | docker

workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test | 24.10.2 | docker

modules/local/multiqc_mappings_config/tests/main.nf.test | 24.10.2 | docker

workflows/sra/tests/sra_skip_fastq_download.nf.test | 24.10.2 | docker

workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test | 24.10.2 | docker

workflows/sra/tests/sra_download_method_sratools.nf.test | 24.10.2 | docker

subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.function.nf.test | 24.10.2 | docker

subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test | 24.10.2 | docker

workflows/sra/tests/main.nf.test | 24.10.2 | docker

modules/nf-core/untar/tests/main.nf.test | 24.10.2 | docker

workflows/sra/tests/sra_download_method_aspera.nf.test | 24.10.2 | docker

subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test | 24.10.2 | docker

subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test | 24.10.2 | docker

tests/main.nf.test | 24.10.2 | docker

modules/local/sra_fastq_ftp/tests/main.nf.test | 24.10.2 | docker

modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test | 24.10.2 | docker

workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test | 24.10.2 | docker

modules/nf-core/sratools/prefetch/tests/main.nf.test | latest-everything | docker

workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test | latest-everything | docker

modules/local/sra_runinfo_to_ftp/tests/main.nf.test | latest-everything | docker

subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test | latest-everything | docker

subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test | latest-everything | docker

modules/local/aspera_cli/tests/main.nf.test | latest-everything | docker

subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test | latest-everything | docker

modules/nf-core/sratools/fasterqdump/tests/main.nf.test | latest-everything | docker

subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_completion.nf.test | latest-everything | docker

workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test | latest-everything | docker

modules/local/sra_ids_to_runinfo/tests/main.nf.test | latest-everything | docker

modules/local/sra_to_samplesheet/tests/main.nf.test | latest-everything | docker

subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_initialisation.nf.test | latest-everything | docker

workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test | latest-everything | docker

modules/local/multiqc_mappings_config/tests/main.nf.test | latest-everything | docker

workflows/sra/tests/sra_skip_fastq_download.nf.test | latest-everything | docker

workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test | latest-everything | docker

workflows/sra/tests/sra_download_method_sratools.nf.test | latest-everything | docker

subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.function.nf.test | latest-everything | docker

subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test | latest-everything | docker

workflows/sra/tests/main.nf.test | latest-everything | docker

modules/nf-core/untar/tests/main.nf.test | latest-everything | docker

workflows/sra/tests/sra_download_method_aspera.nf.test | latest-everything | docker

subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test | latest-everything | docker

subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test | latest-everything | docker

tests/main.nf.test | latest-everything | docker

modules/local/sra_fastq_ftp/tests/main.nf.test | latest-everything | docker

modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test | latest-everything | docker

workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test | latest-everything | docker

confirm-pass

nf-core linting on: pull_request 3

pre-commit

nf-core

nf-core template version comment on: pull_request_target 2

template_version

JUnit Test Report

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