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chore: bump picard #12147

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chore: bump picard

chore: bump picard #12147

Run time

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Job Run time
pytest-changes
9s
nf-test-changes
1m 3s
prettier
56s
pre-commit
12s
editorconfig
14s
pytest (picard/bedtointervallist, conda)
4m 15s
pytest (picard/bedtointervallist, docker)
4m 47s
pytest (picard/bedtointervallist, singularity)
5m 6s
pytest (picard/cleansam, conda)
5m 32s
pytest (picard/cleansam, docker)
5m 5s
pytest (picard/cleansam, singularity)
4m 49s
pytest (picard/collectinsertsizemetrics, conda)
4m 46s
pytest (picard/collectinsertsizemetrics, docker)
4m 47s
pytest (picard/collectinsertsizemetrics, singularity)
6m 54s
pytest (picard/collectmultiplemetrics, conda)
6m 38s
pytest (picard/collectmultiplemetrics, docker)
6m 10s
pytest (picard/collectmultiplemetrics, singularity)
9m 34s
pytest (picard/collectrnaseqmetrics, conda)
4m 58s
pytest (picard/collectrnaseqmetrics, docker)
5m 17s
pytest (picard/collectrnaseqmetrics, singularity)
6m 20s
pytest (picard/collectwgsmetrics, docker)
6m 3s
pytest (picard/collectwgsmetrics, singularity)
8m 54s
pytest (picard/createsequencedictionary, conda)
4m 19s
pytest (picard/createsequencedictionary, docker)
4m 46s
pytest (picard/createsequencedictionary, singularity)
8m 2s
pytest (picard/fastqtosam, conda)
6m 49s
pytest (picard/fastqtosam, docker)
4m 46s
pytest (picard/fastqtosam, singularity)
7m 7s
pytest (picard/filtersamreads, conda)
7m 10s
pytest (picard/filtersamreads, docker)
5m 28s
pytest (picard/filtersamreads, singularity)
7m 33s
pytest (picard/fixmateinformation, conda)
5m 41s
pytest (picard/fixmateinformation, docker)
4m 58s
pytest (picard/fixmateinformation, singularity)
6m 32s
pytest (picard/liftovervcf, conda)
5m 56s
pytest (picard/liftovervcf, docker)
5m 17s
pytest (picard/liftovervcf, singularity)
7m 49s
pytest (picard/mergesamfiles, conda)
4m 53s
pytest (picard/mergesamfiles, docker)
4m 59s
pytest (picard/mergesamfiles, singularity)
6m 52s
pytest (picard/renamesampleinvcf, conda)
5m 28s
pytest (picard/renamesampleinvcf, docker)
5m 18s
pytest (picard/renamesampleinvcf, singularity)
5m 55s
pytest (picard/scatterintervalsbyns, conda)
4m 11s
pytest (picard/scatterintervalsbyns, docker)
4m 44s
pytest (picard/scatterintervalsbyns, singularity)
6m 6s
pytest (picard/sortsam, conda)
4m 14s
pytest (picard/sortsam, docker)
4m 38s
pytest (picard/sortsam, singularity)
6m 13s
pytest (picard/sortvcf, conda)
4m 21s
pytest (picard/sortvcf, docker)
4m 34s
pytest (picard/sortvcf, singularity)
5m 43s
nf-core-lint-modules (bam_qc_picard)
48s
nf-core-lint-modules (bam_markduplicates_picard)
47s
nf-core-lint-modules (picard/extractfingerprint)
2m 2s
nf-core-lint-modules (picard/markduplicates)
1m 32s
nf-core-lint-modules (picard/addorreplacereadgroups)
1m 57s
nf-core-lint-modules (picard/crosscheckfingerprints)
2m 24s
nf-core-lint-modules (picard/collecthsmetrics)
2m 3s
nf-test (modules/nf-core/picard/extractfingerprint, conda)
4m 11s
nf-test (modules/nf-core/picard/extractfingerprint, docker_self_hosted)
3m 0s
nf-test (modules/nf-core/picard/extractfingerprint, singularity)
3m 48s
nf-test (modules/nf-core/picard/markduplicates, conda)
5m 44s
nf-test (modules/nf-core/picard/markduplicates, docker_self_hosted)
3m 16s
nf-test (modules/nf-core/picard/markduplicates, singularity)
6m 12s
nf-test (modules/nf-core/picard/addorreplacereadgroups, conda)
5m 51s
nf-test (modules/nf-core/picard/addorreplacereadgroups, docker_self_hosted)
1m 49s
nf-test (modules/nf-core/picard/addorreplacereadgroups, singularity)
5m 38s
nf-test (modules/nf-core/picard/crosscheckfingerprints, conda)
5m 58s
nf-test (modules/nf-core/picard/crosscheckfingerprints, docker_self_hosted)
3m 42s
nf-test (modules/nf-core/picard/crosscheckfingerprints, singularity)
2m 40s
nf-test (subworkflows/nf-core/bam_qc_picard, conda)
12m 37s
nf-test (subworkflows/nf-core/bam_qc_picard, docker_self_hosted)
4m 22s
nf-test (subworkflows/nf-core/bam_qc_picard, singularity)
7m 6s
nf-test (modules/nf-core/picard/collecthsmetrics, conda)
8m 11s
nf-test (modules/nf-core/picard/collecthsmetrics, docker_self_hosted)
4m 32s
nf-test (modules/nf-core/picard/collecthsmetrics, singularity)
5m 0s
nf-test (subworkflows/nf-core/bam_markduplicates_picard, conda)
16m 31s
nf-test (subworkflows/nf-core/bam_markduplicates_picard, docker_self_hosted)
4m 36s
nf-test (subworkflows/nf-core/bam_markduplicates_picard, singularity)
4m 51s
confirm-pass
1s
6h 44m 0s