better pdiff

nf-core · Feb 25, 2025 · 44fbb1c · 44fbb1c
1 parent 44b327a
commit 44fbb1c
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Showing 2 changed files with 2 additions and 4 deletions.
diff --git a/.github/actions/nf-test/action.yml b/.github/actions/nf-test/action.yml
@@ -68,10 +68,6 @@ runs:
         SENTIEON_LICSRVR_IP: ${{ env.SENTIEON_LICSRVR_IP }}
         SENTIEON_AUTH_MECH: "GitHub Actions - token"
       run: |
-        NFT_WORKDIR=~ \
-        NFT_DIFF=pdiff \
-        NFT_DIFF_ARGS="--line-numbers --expand-tabs=2"
-
         nf-test test \
           --profile=+${{ inputs.profile }} \
           --tap=test.tap \

diff --git a/.github/workflows/nf-test.yml b/.github/workflows/nf-test.yml
@@ -27,6 +27,7 @@ env:
   NFT_DIFF_ARGS: "--line-numbers --width 120 --expand-tabs=2"
   # renovate: datasource=github-releases depName=askimed/nf-test versioning=semver
   NFT_VER: "0.9.2"
+  NFT_WORKDIR: "~"
   NXF_ANSI_LOG: false
   NXF_SINGULARITY_CACHEDIR: ${{ github.workspace }}/.singularity
   NXF_SINGULARITY_LIBRARYDIR: ${{ github.workspace }}/.singularity
@@ -94,6 +95,7 @@ jobs:
           SENTIEON_AUTH_MECH: "GitHub Actions - token"
           NFT_DIFF: ${{ env.NFT_DIFF }}
           NFT_DIFF_ARGS: ${{ env.NFT_DIFF_ARGS }}
+          NFT_WORKDIR: ${{ env.NFT_WORKDIR }}
         with:
           profile: ${{ matrix.profile }}
           shard: ${{ matrix.shard }}