diff --git a/.github/markdownlint.yml b/.github/markdownlint.yml
index 8f97a170e8..9a0066d6f0 100644
--- a/.github/markdownlint.yml
+++ b/.github/markdownlint.yml
@@ -9,4 +9,5 @@ no-duplicate-header:
siblings_only: true
no-inline-html:
allowed_elements:
- - img
\ No newline at end of file
+ - img
+ - p
\ No newline at end of file
diff --git a/CHANGELOG.md b/CHANGELOG.md
index 436428b1c0..e39a31024d 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -17,6 +17,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
- [#41](https://github.com/nf-core/sarek/pull/41) - Update `qualimap` from `2.2.2b` to `2.2.2c`
- [#41](https://github.com/nf-core/sarek/pull/41) - Update `tiddit` from `2.7.1` to `2.8.0`
- [#41](https://github.com/nf-core/sarek/pull/41) - Update `vcfanno` from `0.3.1` to `0.3.2`
+- [#45](https://github.com/nf-core/sarek/pull/45) - Include Workflow figure in `README.md`
### `Fixed`
diff --git a/README.md b/README.md
index 0de61ba17c..d689576f19 100644
--- a/README.md
+++ b/README.md
@@ -15,10 +15,9 @@
[](https://nfcore.slack.com/messages/CGFUX04HZ/)
-
## Introduction
-
+
Previously known as the Cancer Analysis Workflow (CAW),
Sarek is a workflow designed to run analyses on whole genome or targeted sequencing data from regular samples or tumour / normal pairs and could include additional relapses.
@@ -29,6 +28,10 @@ across multiple compute infrastructures in a very portable manner.
Software dependencies are handled using [Conda](https://conda.io/), [Docker](https://www.docker.com) or [Singularity](https://www.sylabs.io/singularity/) - environment/container technologies that provide excellent reproducibility and ease of use.
Thus making installation trivial and results highly reproducible.
+
+
+
+
It's listed on the [Elixir - Tools and Data Services Registry](https://bio.tools/Sarek), [Dockstore](https://dockstore.org/workflows/github.com/nf-core/sarek) and [omicX - Bioinformatics tools](https://omictools.com/sarek-tool).
## Documentation
diff --git a/docs/images/sarek_workflow.png b/docs/images/sarek_workflow.png
new file mode 100644
index 0000000000..f7f019de0c
Binary files /dev/null and b/docs/images/sarek_workflow.png differ
diff --git a/docs/images/sarek_workflow.svg b/docs/images/sarek_workflow.svg
new file mode 100644
index 0000000000..31981409ef
--- /dev/null
+++ b/docs/images/sarek_workflow.svg
@@ -0,0 +1,3675 @@
+
+
+
+
\ No newline at end of file
+
+
Previously known as the Cancer Analysis Workflow (CAW),
Sarek is a workflow designed to run analyses on whole genome or targeted sequencing data from regular samples or tumour / normal pairs and could include additional relapses.
@@ -29,6 +28,10 @@ across multiple compute infrastructures in a very portable manner.
Software dependencies are handled using [Conda](https://conda.io/), [Docker](https://www.docker.com) or [Singularity](https://www.sylabs.io/singularity/) - environment/container technologies that provide excellent reproducibility and ease of use.
Thus making installation trivial and results highly reproducible.
+