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    50 repositories

    • spatial-space-kidney

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Apr 5, 2024Apr 5, 2024

    • cutandrun

      Public
      Nextflow
      •
      MIT License
      •49•0•0•0•Updated Feb 1, 2024Feb 1, 2024

    • test-datasets

      Public
      Test data to be used for automated testing with the nf-core pipelines
      MIT License
      •367•0•0•0•Updated Jun 19, 2023Jun 19, 2023

    • luslab.github.io

      Public
      Main documentation and "play-book" for the London Luslab
      SCSS
      •
      MIT License
      •1•0•0•3•Updated Apr 12, 2023Apr 12, 2023

    • comp-hiclip

      Public
      R
      •0•0•0•0•Updated Feb 7, 2023Feb 7, 2023

    • modules

      Public
      Repository to host tool-specific module files for the Nextflow DSL2 community!
      Nextflow
      •
      MIT License
      •752•1•0•0•Updated Nov 17, 2022Nov 17, 2022

    • briscoe-nf-tobias

      Public
      Nextflow wrapper for the tobias analysis tool
      Nextflow
      •0•1•1•0•Updated Sep 9, 2022Sep 9, 2022

    • oist-assembler

      Public
      OIST long read assembler
      Nextflow
      •1•1•0•1•Updated Aug 2, 2022Aug 2, 2022

    • nf-core-modules

      Public
      Nextflow DSL2 public module repository for luslab maintained nextflow code
      Nextflow
      •
      MIT License
      •0•0•18•1•Updated Aug 1, 2022Aug 1, 2022

    • cheshic-2022-skin-atlas

      Public
      Nextflow
      •0•0•0•0•Updated May 29, 2022May 29, 2022

    • multi-package-containers

      Public
      Testing building mulled containers for multi-requirement tools.
      223•0•0•0•Updated May 9, 2022May 9, 2022

    • nf-core-test-data

      Public
      Test data repository for luslab/nf-core-modules
      0•0•0•0•Updated Feb 15, 2022Feb 15, 2022

    • chromap

      Public
      Fast alignment and preprocessing of chromatin profiles
      C++
      •
      MIT License
      •22•0•0•0•Updated Jan 31, 2022Jan 31, 2022

    • cheshic-ucsc-host

      Public
      0•0•0•0•Updated Jan 24, 2022Jan 24, 2022

    • ahr-tead-motif-analysis

      Public
      Analysis for "Cell-intrinsic Aryl Hydrocarbon Receptor signalling is required for the resolution of injury-induced colonic stem cells"
      Jupyter Notebook
      •0•0•0•0•Updated Dec 18, 2021Dec 18, 2021

    • oz-bulk-rnaseq

      Public
      Notes on analysing RNAseq, focusing on alternative splicing & polyadenylation.
      R
      •3•10•0•0•Updated Nov 23, 2021Nov 23, 2021

    • spacemap-peptide-analysis

      Public
      Data analysis for the SPACEmap experiment
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 4, 2021Nov 4, 2021

    • cheshic-2021-neurips

      Public
      Shell
      •0•0•0•0•Updated Oct 26, 2021Oct 26, 2021

    • luslab-nf-sra-download

      Public
      Python
      •0•1•0•0•Updated Aug 24, 2021Aug 24, 2021

    • rnaseq

      Public
      RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
      Nextflow
      •
      MIT License
      •722•0•0•0•Updated Jun 20, 2021Jun 20, 2021

    • 2020-nov-hackathon-spaceutil

      Public
      Python
      •0•0•1•1•Updated Jun 19, 2021Jun 19, 2021

    • denovohybrid

      Public
      UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads
      Nextflow
      •
      MIT License
      •8•0•0•0•Updated Jun 7, 2021Jun 7, 2021

    • test-upstream

      Public
      GNU General Public License v3.0
      •1•0•0•0•Updated May 2, 2021May 2, 2021

    • luslab-nf-modules

      Public
      Luslab nextflow modules
      Nextflow
      •3•14•0•0•Updated Apr 30, 2021Apr 30, 2021

    • tools

      Public
      Python package with helper tools for the nf-core community.
      Python
      •
      MIT License
      •193•0•0•0•Updated Apr 21, 2021Apr 21, 2021

    • IntergenicTranscription

      Public
      Repository of codes used in the Intergenic transcription manuscript
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 5, 2021Apr 5, 2021

    • luslab-nf-test-dataset-generator

      Public
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Mar 15, 2021Mar 15, 2021

    • distiller-nf

      Public
      a modular Hi-C mapping pipeline
      Groovy
      •
      MIT License
      •25•0•0•0•Updated Mar 11, 2021Mar 11, 2021

    • nf-core-denovohybrid

      Public archive
      A pipeline for assembling and annotating eukaryote genomes using long and short sequencing reads.
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Mar 4, 2021Mar 4, 2021

    • folderstats

      Public
      Python module that creates statistics from a folder structure
      Python
      •
      MIT License
      •27•0•0•0•Updated Feb 11, 2021Feb 11, 2021