Repositories list

• MsBackendMassbank

  Public
  A prototype backend to parse MassBank records into Spectra

  spectramassbank

  R

  •5•3•7•0•Updated Feb 26, 2025Feb 26, 2025

• QFeatures

  Public
  Quantitative features for mass spectrometry data

  rstatsbioconductorproteomics+ 2metabolomicsmass-spectrometry

  R

  •7•26•28•3•Updated Feb 26, 2025Feb 26, 2025

• Spectra

  Public
  Low level infrastructure to handle MS spectra

  rstatsbioconductorproteomics+ 3metabolomicsmass-spectrometryhacktoberfest

  R

  •27•41•40•1•Updated Feb 26, 2025Feb 26, 2025

• SpectriPy

  Public
  Interfacing R's Spectra package with the Python world.

  pythoninfrastructurerstats+ 1mass-spectrometry

  R

  •7•10•10•3•Updated Feb 25, 2025Feb 25, 2025

• RuSirius

  Public
  Interface between the RforMassSpectrometry packages and the Sirius software suite. Should be spelled R-U-Sirius (*are you serious*).

  R

  •1•1•7•0•Updated Feb 24, 2025Feb 24, 2025

• MsDataHub

  Public
  Mass Spectrometry Data on ExperimentHub

  databioconductorproteomics+ 4metabolomicsmass-spectrometryrr-package

  R

  •1•1•1•0•Updated Feb 21, 2025Feb 21, 2025

• Chromatograms

  Public
  Low level infrastructure to handle chromatograms

  R

  •1•1•4•0•Updated Feb 18, 2025Feb 18, 2025

• MsBackendSql

  Public
  MsBackend adding support to store/access mass spectrometry data in large SQL databases through the Spectra R package.

  R

  •0•4•2•0•Updated Feb 13, 2025Feb 13, 2025

• MsBackendMetaboLights

  Public
  MsBackend allowing to retrieve MS data from the MetaboLights repository.

  metabolomicsmass-spectrometrymetabolomics-data

  R

  •0•2•0•0•Updated Feb 12, 2025Feb 12, 2025

• MsExperiment

  Public
  Managing and Processing Mass Spectrometry Experiments

  R

  •5•5•4•1•Updated Feb 11, 2025Feb 11, 2025

• PSMatch

  Public
  Peptide Spectrum Matching

  rstatsproteomicsmass-spectrometry+ 1peptide-spectrum-matches

  R

  •2•3•5•2•Updated Feb 1, 2025Feb 1, 2025

• stickers

  Public
  Sticker for RforMassSpectrometry

  R

  •1•1•0•0•Updated Jan 29, 2025Jan 29, 2025

• rformassspectrometry.r-universe.dev

  Public
  The R for Mass Spectrometry R Universe

  0•1•1•0•Updated Jan 28, 2025Jan 28, 2025

• CompoundDb

  Public
  Creating and using (chemical) compound databases

  annotationdatabasesrstats+ 2metabolomicsmass-spectrometry

  R

  •16•17•28•0•Updated Jan 17, 2025Jan 17, 2025

• MsBackendMsp

  Public
  Mass Spectrometry Data Backend for MSP Files

  infrastructurerstatsmass-spectrometry

  R

  •3•5•7•0•Updated Jan 17, 2025Jan 17, 2025

• MsBackendMgf

  Public
  Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files

  R

  •1•5•1•0•Updated Jan 17, 2025Jan 17, 2025

• ProtGenerics

  Public
  S4 generic functions for Bioconductor mass spectrometry infrastructure

  bioconductorproteomicsmetabolomics+ 2mass-spectrometryr

  R

  •6•8•1•0•Updated Jan 15, 2025Jan 15, 2025

• MetaboAnnotation

  Public
  High level functionality to support and simplify metabolomics data annotation.

  annotationmetabolomicsmass-spectromtry

  R

  •9•15•18•1•Updated Dec 18, 2024Dec 18, 2024

• Metabonaut

  Public
  workflowreproducible-researchmetabolomics+ 1mass-spectrometry

  TeX

  •1•0•0•1•Updated Dec 9, 2024Dec 9, 2024

• MsIO

  Public
  Serializing/importing mass spectrometry data objects eventually using language-agnostic formats.

  proteomicsmetabolomicsmass-spectrometry

  R

  •0•2•3•0•Updated Nov 25, 2024Nov 25, 2024

• MsCoreUtils

  Public
  Core Utils for Mass Spectrometry Data

  utilsrstatsbioconductor+ 3proteomicsmetabolomicsmass-spectrometry

  R

  •11•16•9•2•Updated Oct 21, 2024Oct 21, 2024

• SpectraQL

  Public
  Mass Spec Query Language (MassQL) support for Spectra

  R

  •2•7•8•0•Updated Oct 3, 2024Oct 3, 2024

• MetaboCoreUtils

  Public
  Core utilities for metabolomics.

  metabolomicsmass-spectrometry

  R

  •6•9•8•0•Updated Sep 27, 2024Sep 27, 2024

• RforMassSpectrometry.org

  Public
  The R for Mass Spectrometry Initiative home page

  rstatsbioconductormass-spectrometry

  HTML

  •4•11•3•0•Updated Sep 2, 2024Sep 2, 2024

• book

  Public
  R for Mass Spectrometry documentation

  documentationproteomicsmetabolomics+ 1mass-spectrometry

  TeX

  •7•8•4•1•Updated Jun 26, 2024Jun 26, 2024

• MsBackendTimsTof

  Public
  Spectra backend supporting TimsTOF data files using the opentimsr package.

  infrastructurerstatsmass-spectrometry

  R

  •5•7•3•1•Updated May 14, 2024May 14, 2024

• RforMassSpectrometry

  Public
  The R for Mass Spectrometry meta-package

  R

  •8•17•4•0•Updated Dec 24, 2023Dec 24, 2023

• docs

  Public
  Former R for Mass Spectrometry book repository

  0•0•0•0•Updated Sep 3, 2023Sep 3, 2023

• MsFeatures

  Public
  Functionality for Mass Spectrometry Features.

  R

  •1•7•3•0•Updated Apr 13, 2023Apr 13, 2023

• unimod

  Public
  Amino acid modifications for mass spectrometry

  rproteomicsprotein+ 2mass-spectrometryamino-acid-modifications

  R

  •1•7•6•0•Updated Feb 5, 2023Feb 5, 2023