Giving some SSH credentials to a file server with the files of IP2, it will explore a given list of IP2 projects to get all RAW files and DTASelect files and transfer them to an external FTP site, such as MassIVE
First, you need to write the input file paths created. The better way to do it is to run class:
edu.scripps.yates.ip2tomassive.InputFileGenerator
with a single parameter with the input parameters full path.
This program whould generate a file that will be used in the second part. This file is
DATASET dataset_name
raw-files
raw_data_full_path/raw_data_file1.raw
raw_data_full_path/raw_data_file2.raw
raw_data_full_path/raw_data_file3.raw
DTASelect-files
dtaselect_data_full_path/DTASelect-file1.raw
dtaselect_data_full_path/DTASelect-file2.raw
dtaselect_data_full_path/DTASelect-file3.raw
Then, you need to run a second script from class:
edu.scripps.yates.ip2tomassive.MultiProjectUpload
with two parameters:
- the full path to the properties file (the same as the one used in the previous script).
- the full path to the output file generated from previous script.
You can download a template from here: ip2FileTransfer.properties
# ip2 server (SSH if port 22) login info
ip2_server_url = ip2_server_host_name
ip2_server_user_name = your_user_name
ip2_server_password = *****
ip2_server_connection_port = 22
ip2_server_project_base_path = full_path_to_project_base_folder
# massive FTP login info
massive_server_url = massive.ucsd.edu
massive_server_user_name = your_user_name
massive_server_password = ******
# information about the project in IP2
project_name = name of your project # this will be used to create a folder with that name in your FTP site in the remote host
experiment_ids = 13602,13622,13630,13651,13694,14439,14440,13748 # number ids of the experiments you want to transfer