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pom.xml
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<!-- for releasing to Maven Central / OSS Sonatype -->
<parent>
<groupId>org.sonatype.oss</groupId>
<artifactId>oss-parent</artifactId>
<version>9</version>
</parent>
<modelVersion>4.0.0</modelVersion>
<groupId>org.rcsb</groupId>
<artifactId>mmtf</artifactId>
<packaging>pom</packaging>
<version>1.0.12-SNAPSHOT</version>
<name>mmtf</name>
<description>MMTF is a compressed, fast and useful format for serving macromolecular data.
</description>
<url>https://github.com/rcsb</url>
<organization>
<name>RCSB PDB</name>
<url>http://www.rcsb.org/</url>
</organization>
<licenses>
<license>
<name>Apache 2.0</name>
<url>https://www.apache.org/licenses/LICENSE-2.0</url>
<distribution>repo</distribution>
</license>
</licenses>
<properties>
<jdk.version>1.8</jdk.version>
<maven.enforcer.jdk-version>1.8</maven.enforcer.jdk-version>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<project.build.targetEncoding>UTF-8</project.build.targetEncoding>
<maxmem>512M</maxmem>
<slf4j.version>1.7.21</slf4j.version>
<log4j.version>2.17.1</log4j.version>
</properties>
<scm>
<connection>scm:git:git://github.com:rcsb/mmtf-java.git</connection>
<developerConnection>scm:git:[email protected]:rcsb/mmtf-java.git</developerConnection>
<url>https://github.com/rcsb/mmtf-java</url>
<tag>HEAD</tag>
</scm>
<build>
<pluginManagement>
<plugins>
<plugin>
<groupId>org.eclipse.m2e</groupId>
<artifactId>lifecycle-mapping</artifactId>
<version>1.0.0</version>
<configuration>
<lifecycleMappingMetadata>
<pluginExecutions>
<pluginExecution>
<pluginExecutionFilter>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-enforcer-plugin</artifactId>
<versionRange>[1.0.0,)</versionRange>
<goals>
<goal>enforce</goal>
</goals>
</pluginExecutionFilter>
<action>
<ignore />
</action>
</pluginExecution>
</pluginExecutions>
</lifecycleMappingMetadata>
</configuration>
</plugin>
<plugin>
<artifactId>maven-clean-plugin</artifactId>
<version>3.0.0</version>
</plugin>
<plugin>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.5.1</version>
<configuration>
<source>${jdk.version}</source>
<target>${jdk.version}</target>
</configuration>
</plugin>
<plugin>
<artifactId>maven-dependency-plugin</artifactId>
<version>2.10</version>
</plugin>
<plugin>
<artifactId>maven-jar-plugin</artifactId>
<version>3.0.2</version>
</plugin>
<plugin>
<artifactId>maven-scm-plugin</artifactId>
<version>1.9.5</version>
</plugin>
<plugin>
<artifactId>maven-source-plugin</artifactId>
<version>3.0.1</version>
</plugin>
<plugin>
<artifactId>maven-failsafe-plugin</artifactId>
<version>2.19.1</version>
</plugin>
<plugin>
<groupId>net.sf</groupId>
<artifactId>stat-scm</artifactId>
<version>1.2.0</version>
</plugin>
<plugin>
<groupId>org.jvnet.jaxb2.maven2</groupId>
<artifactId>maven-jaxb2-plugin</artifactId>
<version>0.13.1</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-release-plugin</artifactId>
<version>2.5.3</version>
<configuration>
<remoteTagging>true</remoteTagging>
<preparationGoals>clean install</preparationGoals>
<autoVersionSubmodules>true</autoVersionSubmodules>
<!-- work around for GPG hanging issue http://jira.codehaus.org/browse/MGPG-9 -->
<mavenExecutorId>forked-path</mavenExecutorId>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>3.1.1</version>
<configuration>
<maxmemory>256m</maxmemory>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-shade-plugin</artifactId>
<version>2.4.3</version>
</plugin>
<plugin>
<artifactId>maven-assembly-plugin</artifactId>
<version>2.6</version>
<configuration>
<descriptors>
<descriptor>src/main/assembly/assembly.xml</descriptor>
</descriptors>
</configuration>
<!-- Attach the creation of the assembly to the package phase. -->
<executions>
<execution>
<id>assemble</id>
<phase>package</phase>
<goals>
<goal>single</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>findbugs-maven-plugin</artifactId>
<version>3.0.4</version>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>buildnumber-maven-plugin</artifactId>
<version>1.4</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-checkstyle-plugin</artifactId>
<version>2.17</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-resources-plugin</artifactId>
<version>3.0.1</version>
</plugin>
<plugin>
<artifactId>maven-enforcer-plugin</artifactId>
<version>1.4.1</version>
<executions>
<execution>
<id>enforce-java</id>
<goals>
<goal>enforce</goal>
</goals>
<configuration>
<rules>
<requireJavaVersion>
<version>${maven.enforcer.jdk-version}</version>
</requireJavaVersion>
</rules>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</pluginManagement>
<plugins>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>cobertura-maven-plugin</artifactId>
<version>2.7</version>
<configuration>
<format>xml</format>
<maxmem>256m</maxmem>
<!-- aggregated reports for multi-module projects -->
<aggregate>true</aggregate>
</configuration>
</plugin>
<plugin>
<groupId>org.eluder.coveralls</groupId>
<artifactId>coveralls-maven-plugin</artifactId>
<version>4.2.0</version>
</plugin>
<!-- for deployment on OSS Sonatype -->
<plugin>
<groupId>org.sonatype.plugins</groupId>
<artifactId>nexus-staging-maven-plugin</artifactId>
<version>1.6.7</version>
<extensions>true</extensions>
<configuration>
<serverId>ossrh</serverId>
<nexusUrl>https://oss.sonatype.org/</nexusUrl>
<autoReleaseAfterClose>true</autoReleaseAfterClose>
</configuration>
</plugin>
<!-- for digital signing of code -->
<!--<plugin> -->
<!--<groupId>org.apache.maven.plugins</groupId> -->
<!--<artifactId>maven-gpg-plugin</artifactId> -->
<!--<version>1.5</version> -->
<!--<executions> -->
<!--<execution> -->
<!--<id>sign-artifacts</id> -->
<!--<phase>verify</phase> -->
<!--<goals> -->
<!--<goal>sign</goal> -->
<!--</goals> -->
<!--</execution> -->
<!--</executions> -->
<!--</plugin> -->
<!-- give more memory for junit tests -->
<plugin>
<artifactId>maven-surefire-plugin</artifactId>
<version>2.19.1</version>
<configuration>
<argLine>-Xmx1800M</argLine>
<reuseForks>false</reuseForks>
<forkCount>1</forkCount>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<configuration>
<archive>
<addMavenDescriptor>false</addMavenDescriptor>
<manifest>
<addDefaultSpecificationEntries>true</addDefaultSpecificationEntries>
<addDefaultImplementationEntries>true</addDefaultImplementationEntries>
</manifest>
<manifestEntries>
<Trusted-Library>true</Trusted-Library>
<Permissions>all-permissions</Permissions>
<Codebase>*</Codebase>
<Application-Name>MMTF</Application-Name>
</manifestEntries>
</archive>
</configuration>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>findbugs-maven-plugin</artifactId>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-checkstyle-plugin</artifactId>
<configuration>
<!-- <enableFilesSummary>true</enableFilesSummary> <enableSeveritySummary>true</enableSeveritySummary> -->
<enableRulesSummary>false</enableRulesSummary>
<!-- <consoleOutput>true</consoleOutput> -->
</configuration>
</plugin>
</plugins>
<extensions>
<extension>
<groupId>org.apache.maven.wagon</groupId>
<artifactId>wagon-ssh</artifactId>
<version>2.6</version>
</extension>
</extensions>
</build>
<dependencyManagement>
<dependencies>
<dependency>
<groupId>uk.co.jemos.podam</groupId>
<artifactId>podam</artifactId>
<version>2.3.12.RELEASE</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.unitils</groupId>
<artifactId>unitils-core</artifactId>
<version>3.4.2</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.13.1</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>commons-beanutils</groupId>
<artifactId>commons-beanutils</artifactId>
<version>1.9.4</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
<version>${slf4j.version}</version>
</dependency>
<!-- binding for log4j 2 -->
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-slf4j-impl</artifactId>
<version>${log4j.version}</version>
<!-- runtime scope includes the test scope as well -->
<scope>runtime</scope>
</dependency>
<!-- Log4j API and Core implementation required for binding -->
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-api</artifactId>
<version>${log4j.version}</version>
<!-- runtime scope includes the test scope as well -->
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-core</artifactId>
<version>${log4j.version}</version>
<!-- runtime scope includes the test scope as well -->
<scope>runtime</scope>
</dependency>
</dependencies>
</dependencyManagement>
<reporting>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>3.1.1</version>
<configuration>
<doclet>org.umlgraph.doclet.UmlGraphDoc</doclet>
<docletArtifact>
<groupId>org.umlgraph</groupId>
<artifactId>umlgraph</artifactId>
<version>5.6</version>
</docletArtifact>
<additionalparam>-views -all</additionalparam>
<useStandardDocletOptions>true</useStandardDocletOptions>
</configuration>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>findbugs-maven-plugin</artifactId>
<version>3.0.4</version>
</plugin>
</plugins>
</reporting>
<profiles>
<!-- Note: before you can use this build profile you need to set up an
environment that contains correctly signed keys. Configure the keystore properties
and the profile in ~/.m2/settings.xml -->
<profile>
<id>codesigning</id>
<activation>
<activeByDefault>false</activeByDefault>
</activation>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jarsigner-plugin</artifactId>
<version>1.4</version>
<executions>
<execution>
<id>sign</id>
<goals>
<goal>sign</goal>
</goals>
</execution>
</executions>
<configuration>
<verbose>true</verbose>
<certs>true</certs>
<storetype>${keystore.type}</storetype>
<keystore>${keystore.path}</keystore>
<alias>${keystore.alias}</alias>
<storepass>${keystore.store.password}</storepass>
<keypass>${keystore.key.password}</keypass>
<signedjar>${project.build.directory}/${project.build.finalName}.jar</signedjar>
<verify>true</verify>
<verbose>true</verbose>
<goal>sign</goal>
<arguments>
<argument>-tsa</argument>
<argument>https://timestamp.geotrust.com/tsa</argument>
</arguments>
</configuration>
</plugin>
</plugins>
</build>
</profile>
<profile>
<id>release-sign-artifacts</id>
<activation>
<property>
<name>performRelease</name>
<value>true</value>
</property>
</activation>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-gpg-plugin</artifactId>
<version>1.6</version>
<executions>
<execution>
<id>sign-artifacts</id>
<phase>verify</phase>
<goals>
<goal>sign</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</build>
</profile>
</profiles>
<modules>
<module>mmtf-serialization</module>
<module>mmtf-api</module>
<module>mmtf-codec</module>
</modules>
<inceptionYear>2015</inceptionYear>
<issueManagement>
<system>Github</system>
<url>https://github.com/rcsb/mmtf-java/issues</url>
</issueManagement>
<ciManagement>
<system>Travis</system>
<url>https://travis-ci.org/</url>
</ciManagement>
</project>