Increased stability for frequency calculations

Increased stability for frequency calculations

Full Changelog: 1.4.1...1.4.2

1.4.1 fixes misscalculation in frequency plot per strand

Full Changelog: 1.4.0...1.4.1

1.4.0 Mapper alternative

• set minimap2 as default mapper, added bwa as alternative
• cleaned code

Full Changelog: 1.3.0...1.4.0

1.3.0 Strand information for frequency plots

• Adding strand information to the frequency plots.
• minor adjustments on the default hardware threads

Full Changelog: 1.2.1...1.3.0

1.2.1 Added new flag --keep_coordinates

What's Changed

• add --keep_coordinates: to get all reference bases back in the masked consensus. Preventing position shift
• updated flowchart

Full Changelog: 1.1.0...1.2.1

1.1.0 Added Singularity and Slurm, Bug Fix

What's Changed

• Adding SLURM and Singularity by @hoelzer in #3
• Fixing Motif Plot errors for empty files
• Updated README and help message

Full Changelog: 1.0.0...1.1.0

Public Release 1.0.0

Full Changelog: 0.4.0...1.0.0

various improvements

Full Changelog: 0.3.0...0.4.0

Adding degenerate code and coverage masking

Full Changelog: 0.2.0...0.3.0

Masking info and chromosome extract info

Full Changelog: 0.1.0...0.2.0