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Compilation fails on macOS 13 + R-devel #143

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gaborcsardi opened this issue Aug 25, 2024 · 0 comments
Open

Compilation fails on macOS 13 + R-devel #143

gaborcsardi opened this issue Aug 25, 2024 · 0 comments

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@gaborcsardi
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Describe the problem

Compilation fails on macOS 13 and R-devel:

  * installing *source* package ‘sass’ ...
  ** package ‘sass’ successfully unpacked and MD5 sums checked
  staged installation is only possible with locking
  ** using non-staged installation
  ** libs
  /Library/Frameworks/R.framework/Resources/share/make/shlib.mk:18: warning: overriding commands for target `shlib-clean'
  Makevars:12: warning: ignoring old commands for target `shlib-clean'
  using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
  using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
  using SDK: ‘’
  /Library/Frameworks/R.framework/Resources/share/make/shlib.mk:18: warning: overriding commands for target `shlib-clean'
  Makevars:12: warning: ignoring old commands for target `shlib-clean'
  clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./libsass/include  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -Wall -pedantic -c compile.c -o compile.o
  clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./libsass/include  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -Wall -pedantic  -c init.cpp -o init.o
  In file included from init.cpp:1:
  In file included from ./compile.h:4:
  In file included from /Library/Frameworks/R.framework/Resources/include/Rinternals.h:47:
  In file included from /Library/Frameworks/R.framework/Resources/include/R_ext/Error.h:30:
  In file included from /Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:30:
  /Applications/Xcode_15.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/cstring:117:1: error: templates must have C++ linkage
  template <class _Tp>
  ^~~~~~~~~~~~~~~~~~~~
  /Library/Frameworks/R.framework/Resources/include/Rinternals.h:37:1: note: extern "C" language linkage specification begins here
  extern "C" {
  ^
  1 error generated.
  make: *** [init.o] Error 1
  ERROR: compilation failed for package ‘sass’
  * removing ‘/private/var/folders/zq/1mkv5ktx0_5cz1rlynrmdmlh0000gn/T/RtmpvybaaL/pkg-lib1ad97b06ad6a/sass’

# Include a minimal and reproducible example here
# If you don't know what that means, please see https://www.tidyverse.org/help
remotes::install_github("r-lib/sass")

Session Info


  ─ Session info ───────────────────────────────────────────────────────────────
   setting  value
   version  R Under development (unstable) (2024-08-22 r87039)
   os       macOS Ventura 13.6.9
   system   x86_64, darwin20
   ui       X11
   language (EN)
   collate  en_US.UTF-8
   ctype    en_US.UTF-8
   tz       UTC
   date     2024-08-25
   pandoc   3.1.11 @ /usr/local/bin/pandoc

─ Packages ───────────────────────────────────────────────────────────────────

! package     * version    date (UTC) lib source

askpass       1.2.0      2023-09-03 [1] CRAN (R 4.5.0)

base        * 4.5.0      2024-08-23 [?] local

base64enc     0.1-3      2015-07-28 [1] CRAN (R 4.5.0)

boot          1.3-30     2024-02-26 [3] CRAN (R 4.5.0)

brio          1.1.5      2024-04-24 [1] CRAN (R 4.5.0)

bslib         0.8.0      2024-07-29 [1] CRAN (R 4.5.0)

cachem        1.1.0      2024-05-16 [1] CRAN (R 4.5.0)

callr         3.7.6      2024-03-25 [1] CRAN (R 4.5.0)

class         7.3-22     2023-05-03 [3] CRAN (R 4.5.0)

cli           3.6.3      2024-06-21 [1] CRAN (R 4.5.0)

cluster       2.1.6      2023-12-01 [3] CRAN (R 4.5.0)

codetools     0.2-20     2024-03-31 [3] CRAN (R 4.5.0)

commonmark    1.9.1      2024-01-30 [1] CRAN (R 4.5.0)

P compiler      4.5.0      2024-08-23 [3] local

covr          3.6.4      2023-11-09 [1] CRAN (R 4.5.0)

crayon        1.5.3      2024-06-20 [1] CRAN (R 4.5.0)

curl          5.2.1      2024-03-01 [1] CRAN (R 4.5.0)

P datasets    * 4.5.0      2024-08-23 [3] local

desc          1.4.3      2023-12-10 [1] CRAN (R 4.5.0)

diffobj       0.3.5      2021-10-05 [1] CRAN (R 4.5.0)

digest        0.6.37     2024-08-19 [1] CRAN (R 4.5.0)

evaluate      0.24.0     2024-06-10 [1] CRAN (R 4.5.0)

fansi         1.0.6      2023-12-08 [1] CRAN (R 4.5.0)

fastmap       1.2.0      2024-05-15 [1] CRAN (R 4.5.0)

fontawesome   0.5.2      2023-08-19 [1] CRAN (R 4.5.0)

foreign       0.8-87     2024-06-26 [3] CRAN (R 4.5.0)

fs            1.6.4.9000 2024-08-25 [1] Github (r-lib/fs@cee5901)

glue          1.7.0      2024-01-09 [1] CRAN (R 4.5.0)

P graphics    * 4.5.0      2024-08-23 [3] local

P grDevices   * 4.5.0      2024-08-23 [3] local

grid          4.5.0      2024-08-23 [?] local

highr         0.11       2024-05-26 [1] CRAN (R 4.5.0)

htmltools     0.5.8.1    2024-04-04 [1] CRAN (R 4.5.0)

httpuv        1.6.15     2024-03-26 [1] CRAN (R 4.5.0)

httr          1.4.7      2023-08-15 [1] CRAN (R 4.5.0)

hunspell      3.0.4      2024-08-19 [1] CRAN (R 4.5.0)

jquerylib     0.1.4      2021-04-26 [1] CRAN (R 4.5.0)

jsonlite      1.8.8      2023-12-04 [1] CRAN (R 4.5.0)

KernSmooth    2.23-24    2024-05-17 [3] CRAN (R 4.5.0)

knitr         1.48       2024-07-07 [1] CRAN (R 4.5.0)

later         1.3.2      2023-12-06 [1] CRAN (R 4.5.0)

lattice       0.22-6     2024-03-20 [3] CRAN (R 4.5.0)

lazyeval      0.2.2      2019-03-15 [1] CRAN (R 4.5.0)

lifecycle     1.0.4      2023-11-07 [1] CRAN (R 4.5.0)

magrittr      2.0.3      2022-03-30 [1] CRAN (R 4.5.0)

MASS          7.3-61     2024-06-13 [3] CRAN (R 4.5.0)

Matrix        1.7-0      2024-04-26 [3] CRAN (R 4.5.0)

memoise       2.0.1      2021-11-26 [1] CRAN (R 4.5.0)

P methods     * 4.5.0      2024-08-23 [3] local

mgcv          1.9-1      2023-12-21 [3] CRAN (R 4.5.0)

mime          0.12       2021-09-28 [1] CRAN (R 4.5.0)

mockery       0.4.4      2023-09-26 [1] CRAN (R 4.5.0)

nlme          3.1-166    2024-08-14 [3] CRAN (R 4.5.0)

nnet          7.3-19     2023-05-03 [3] CRAN (R 4.5.0)

openssl       2.2.1      2024-08-16 [1] CRAN (R 4.5.0)

pak           0.8.0      2024-08-09 [2] local

parallel      4.5.0      2024-08-23 [?] local

pillar        1.9.0      2023-03-22 [1] CRAN (R 4.5.0)

pkgbuild      1.4.4      2024-03-17 [1] CRAN (R 4.5.0)

pkgconfig     2.0.3      2019-09-22 [1] CRAN (R 4.5.0)

pkgload       1.4.0      2024-06-28 [1] CRAN (R 4.5.0)

praise        1.0.0      2015-08-11 [1] CRAN (R 4.5.0)

prettyunits   1.2.0      2023-09-24 [1] CRAN (R 4.5.0)

processx      3.8.4      2024-03-16 [1] CRAN (R 4.5.0)

promises      1.3.0      2024-04-05 [1] CRAN (R 4.5.0)

ps            1.7.7      2024-07-02 [1] CRAN (R 4.5.0)

R6            2.5.1      2021-08-19 [1] CRAN (R 4.5.0)

rappdirs      0.3.3      2021-01-31 [1] CRAN (R 4.5.0)

rcmdcheck     1.4.0      2021-09-27 [1] any (@1.4.0)

Rcpp          1.0.13     2024-07-17 [1] CRAN (R 4.5.0)

rematch2      2.1.2      2020-05-01 [1] CRAN (R 4.5.0)

rex           1.2.1      2021-11-26 [1] CRAN (R 4.5.0)

rlang         1.1.4      2024-06-04 [1] CRAN (R 4.5.0)

rmarkdown     2.28       2024-08-17 [1] CRAN (R 4.5.0)

rpart         4.1.23     2023-12-05 [3] CRAN (R 4.5.0)

rprojroot     2.0.4      2023-11-05 [1] CRAN (R 4.5.0)

sass          0.4.9.9000 2024-08-25 [1] deps

sessioninfo   1.2.2      2021-12-06 [1] any (@1.2.2)

shiny         1.9.1      2024-08-01 [1] CRAN (R 4.5.0)

sourcetools   0.1.7-1    2023-02-01 [1] CRAN (R 4.5.0)

spatial       7.3-17     2023-07-20 [3] CRAN (R 4.5.0)

spelling      2.3.0      2024-03-05 [1] CRAN (R 4.5.0)

splines       4.5.0      2024-08-23 [?] local

P stats       * 4.5.0      2024-08-23 [3] local

stats4        4.5.0      2024-08-23 [?] local

survival      3.7-0      2024-06-05 [3] CRAN (R 4.5.0)

sys           3.4.2      2023-05-23 [1] CRAN (R 4.5.0)

tcltk         4.5.0      2024-08-23 [?] local

testthat      3.2.1.1    2024-04-14 [1] CRAN (R 4.5.0)

tibble        3.2.1      2023-03-20 [1] CRAN (R 4.5.0)

tinytex       0.52       2024-07-18 [1] CRAN (R 4.5.0)

P tools         4.5.0      2024-08-23 [3] local

utf8          1.2.4      2023-10-22 [1] CRAN (R 4.5.0)

P utils       * 4.5.0      2024-08-23 [3] local

vctrs         0.6.5      2023-12-01 [1] CRAN (R 4.5.0)

waldo         0.5.3      2024-08-23 [1] CRAN (R 4.5.0)

withr         3.0.1      2024-07-31 [1] CRAN (R 4.5.0)

xfun          0.47       2024-08-17 [1] CRAN (R 4.5.0)

xml2          1.3.6.9000 2024-08-25 [1] Github (r-lib/xml2@d1a81d3)

xopen         1.0.1      2024-04-25 [1] CRAN (R 4.5.0)

xtable        1.8-4      2019-04-21 [1] CRAN (R 4.5.0)

yaml          2.3.10     2024-07-26 [1] CRAN (R 4.5.0)


[1] /Users/runner/work/_temp/Library

[2] /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/site-library

[3] /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library


P ── Loaded and on-disk path mismatch.


──────────────────────────────────────────────────────────────────────────────

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