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exploring gather results in a more intuitive/friendly way #3536

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ctb opened this issue Feb 16, 2025 · 0 comments
Open

exploring gather results in a more intuitive/friendly way #3536

ctb opened this issue Feb 16, 2025 · 0 comments
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plugin_todo Write a plugin for this!

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@ctb
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ctb commented Feb 16, 2025

see https://github.com/ctb/2025-explore-sourmash-gather. Example output:

% ~/2025-explore-sourmash-gather/explore-gather.py display SRR4420318.k51.csv
** displaying gather results for given CSVs: n=3, t=0.01

Query: SRR4420318 (90.7% assigned in 981 total matches; 3 shown)
  1: GCF_000001405.40 human (Homo sapiens) - 83.8% (83.8%) - 1.6 Gbp
  2: GCA_900184025.1 Amynthas corticis - 3.4% (87.2%) - 180.0 kbp
  3: GCA_029289425.3 pygmy chimpanzee (Pan... - 1.0% (88.2%) - 0.8 Gbp
  ... (978 matches not shown)

this could become a plugin, ofc.

@ctb ctb added the plugin_todo Write a plugin for this! label Feb 16, 2025
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