.gitlab-ci.yml

image: python:3.7.0

# Change pip's cache directory to be inside the project directory since we can
# # only cache local items.
variables:
    PIP_CACHE_DIR: "$CI_PROJECT_DIR/.cache/pip"
#
#     # Pip's cache doesn't store the python packages
#     # https://pip.pypa.io/en/stable/reference/pip_install/#caching
#     #
#     # If you want to also cache the installed packages, you have to install
#     # them in a virtualenv and cache it as well.

before_script:
    #  - apt-get update -y && apt-get install libhdf5-serial-dev -y
    - python -V # Print out python version for debugging
    - python -m venv venv
    - source venv/bin/activate
    - pip install -U pip
    - "which ssh-agent || ( apt-get update -y && apt-get install openssh-client -y )"
    - eval $(ssh-agent -s)
    - echo "$SSH_PRIVATE_KEY" | tr -d '\r' | ssh-add -
    - mkdir -p ~/.ssh
    - chmod 700 ~/.ssh
    - '[[ -f /.dockerenv ]] && echo -e "Host *\n\tStrictHostKeyChecking no\n\n" > ~/.ssh/config'

stages:
    - test
    - installation_pip

check_code:
    tags:
        - modern
    stage: test
    script:
        - pip install -U pip
        - pip install poetry==1.1.4
        - poetry install
        - mkdir cert
        - echo "$ca_cert" > "./cert/Proteomicsdb-Prosit.crt"
        - echo "$cert" > "./cert/ci-pipeline.crt"
        - echo "$key" > "./cert/ci-pipeline.key"
        - python -m pytest tests/ --cov=prosit_grpc --junitxml=junit.xml --cov-report=xml

    artifacts:
        reports:
            junit: junit.xml
            cobertura: coverage.xml

check_simple_installation:
    tags:
        - modern
    stage: installation_pip
    script:
        - pip install -e git+ssh://git@gitlab.lrz.de/proteomics/prosit_tools/prosit_grpc.git@$CI_COMMIT_SHORT_SHA#egg=prosit_grpc