MultimodalTCGA

Datasets

cluster: 10.5.34.21
source: /mnt/lustre/share_data/chenfeiyang



.
├── data
│   ├── cnv1.csv
│   ├── CNV.csv
│   ├── df_all_image.csv
│   ├── df_all_image_new.csv
│   ├── df_all_new2.csv
│   ├── df_all_new.csv
│   ├── df_all_new_new.csv
│   ├── DNA_VAF_GDC.csv
│   ├── gdc_all_data.csv
│   ├── gdc_label_info.csv
│   ├── GDC_miRNA.csv
│   ├── gdc_primary.csv
│   ├── GDC_RNA.csv
│   ├── gdc_transfer.csv
│   ├── newfea_GDC_methy.csv
│   ├── RPPA.csv
│   └── Xs_576.csv
├── GDC_data
│   ├── broad.mit.edu_PANCAN_Genome_Wide_SNP_6_whitelisted.xena
│   ├── broad.mit.edu_PANCAN_Genome_Wide_SNP_6_whitelisted.xena.gz
│   ├── CNV.csv
│   ├── CNV_data.csv
│   ├── df_all.csv
│   ├── EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv
│   ├── GDC-PANCAN.htseq_fpkm-uq.tsv
│   ├── GDC-PANCAN.methylation27.tsv
│   ├── GDC-PANCAN.methylation450.tsv
│   ├── GDC-PANCAN.mutect2_snv.tsv
│   ├── gene_symbol.csv
│   ├── Gistic2_CopyNumber_Gistic2_all_data_by_genes
│   ├── Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes
│   ├── jhu-usc.edu_PANCAN_HumanMethylation450.betaValue_whitelisted.tsv
│   ├── jhu-usc.edu_PANCAN_merged_HumanMethylation27_HumanMethylation450.betaValue_whitelisted.tsv
│   ├── pancanMiRs_EBadjOnProtocolPlatformWithoutRepsWithUnCorrectMiRs_08_04_16.csv
│   ├── Survival_SupplementalTable_S1_20171025_xena_sp
│   ├── TCGA.PANCAN.sampleMap_Gistic2_CopyNumber_Gistic2_all_data_by_genes.gz
│   ├── TCGA.PANCAN.sampleMap_Gistic2_CopyNumber_Gistic2_all_thresholded.by_genes.gz
│   └── TCGA-RPPA-pancan-clean.txt
├── image_data
├── image_deconvolved
├── image_deconvolved2