HLA Truth set

[NTNguyen13]

Hi, I want to do some benchmark HLA typing methods, I found out that Illumina Platinum Genomes is a common source of solid validation. However, I haven't found the truth set of HLA allele, I have searched from the website and the github too.

Could you please direct me to where I can get this dataset?

[eberle]

Hello, We never specifically called HLA as part of the Platinum Genomes other than the calling that was done using the usual pipelines. Have you downloaded the calls for NA12878 and NA12877 from the website to see what is in the HLA region? Cheers,

…

-Mike

-- From: NTNguyen13 <[email protected]> Reply-To: Illumina/PlatinumGenomes <[email protected]> Date: Monday, April 13, 2020 at 8:24 PM To: Illumina/PlatinumGenomes <[email protected]> Cc: Subscribed <[email protected]> Subject: [Illumina/PlatinumGenomes] HLA Truth set (#9) External message, be mindful when clicking links or attachments Hi, I want to do some benchmark HLA typing methods, I found out that Illumina Platinum Genomes is a common source of solid validation. However, I haven't found the truth set of HLA allele, I have searched from the website and the github too. Could you please direct me to where I can get this dataset? — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub<https://urldefense.com/v3/__https:/github.com/Illumina/PlatinumGenomes/issues/9__;!!HrbR-XT-OQ!F94GSt9nciui1Zlo89xZcqU9lQFfY0YuKQnaMW5CHOgl05ZqcwfSzivBGiQBD-M$>, or unsubscribe<https://urldefense.com/v3/__https:/github.com/notifications/unsubscribe-auth/ABKRGYTP534CGEBMV2T2WITRMPJO3ANCNFSM4MHM6EIA__;!!HrbR-XT-OQ!F94GSt9nciui1Zlo89xZcqU9lQFfY0YuKQnaMW5CHOgl05ZqcwfSzivBYjStjhk$>.

[NTNguyen13]

Alright, I see, thank you very much, I will try to see the HLA region from the calls