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stelmo committed Apr 8, 2022
1 parent 536e679 commit c5ccab9
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Showing 2 changed files with 10 additions and 7 deletions.
5 changes: 2 additions & 3 deletions src/base/constants.jl
Original file line number Diff line number Diff line change
Expand Up @@ -27,9 +27,8 @@ const _constants = (
metformulas = ["metFormula", "metFormulas"],
metcharges = ["metCharge", "metCharges"],
metcompartments = ["metCompartment", "metCompartments"],
rxnnames = ["rxnNames",],
metnames = ["metNames",],

rxnnames = ["rxnNames"],
metnames = ["metNames"],
),
gene_annotation_checks = (
"ncbigene",
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12 changes: 8 additions & 4 deletions src/base/types/MATModel.jl
Original file line number Diff line number Diff line change
Expand Up @@ -252,13 +252,17 @@ end
Extract reaction name from `rxnNames`.
"""
reaction_name(m::MATModel, rid::String) =
_maybemap(x -> x[findfirst(==(rid), reactions(m))], gets(m.mat, nothing, _constants.keynames.rxnnames))
reaction_name(m::MATModel, rid::String) = _maybemap(
x -> x[findfirst(==(rid), reactions(m))],
gets(m.mat, nothing, _constants.keynames.rxnnames),
)

"""
metabolite_name(m::MATModel, mid::String)
Extract metabolite name from `metNames`.
"""
metabolite_name(m::MATModel, mid::String) =
_maybemap(x -> x[findfirst(==(mid), metabolites(m))], gets(m.mat, nothing, _constants.keynames.metnames))
metabolite_name(m::MATModel, mid::String) = _maybemap(
x -> x[findfirst(==(mid), metabolites(m))],
gets(m.mat, nothing, _constants.keynames.metnames),
)

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