Skip to content
@Molmed

Uppsala University, Department of Medical Sciences, Molecular Precision Medicine

Molecular Precision Medicine research group and the SNP&SEQ Technology Platform

Pinned Loading

  1. irma-scripts irma-scripts Public

    Stand-alone scripts deployed to Irma

    Python 1 7

Repositories

Showing 10 of 62 repositories
  • checkQC Public

    CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria

    Molmed/checkQC’s past year of commit activity
    Python 27 GPL-3.0 17 10 (2 issues need help) 1 Updated Feb 25, 2025
  • conformist Public

    A conformal prediction framework implementing conformal risk control, providing statistically guaranteed prediction sets for any classifier.

    Molmed/conformist’s past year of commit activity
    Python 3 MIT 0 1 0 Updated Feb 21, 2025
  • ALLCoP Public

    Conformal prediction for acute lymphoblastic leukemia (ALL) RNA-seq classifiers

    Molmed/ALLCoP’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Feb 21, 2025
  • allium_prepro Public

    Tools to preprocess gene expression and DNA methylation data for prediction using the ALLIUM classifier.

    Molmed/allium_prepro’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Feb 19, 2025
  • irma-scripts Public

    Stand-alone scripts deployed to Irma

    Molmed/irma-scripts’s past year of commit activity
    Python 1 7 0 3 Updated Feb 7, 2025
  • seqreports Public

    This is a Nextflow pipeline for generating sequencing reports for the SNP&Seq Technology platform, NGI Uppsala, SciLifelab Genomics.

    Molmed/seqreports’s past year of commit activity
    Python 1 11 0 0 Updated Jan 30, 2025
  • allium Public

    The ALLIUM classifier for predicting Acute Lymphoblastic Leukemia subtype using RNA-seq and DNA methylation data.

    Molmed/allium’s past year of commit activity
    R 2 MIT 0 0 0 Updated Dec 9, 2024
  • st2-docker Public Forked from matrulda/st2-docker

    StackStorm docker-compose deployment

    Molmed/st2-docker’s past year of commit activity
    Shell 0 Apache-2.0 158 0 0 Updated Nov 27, 2024
  • genologics Public Forked from SciLifeLab/genologics

    Python interface to the GenoLogics LIMS server via its REST API.

    Molmed/genologics’s past year of commit activity
    Python 0 MIT 53 0 2 Updated Nov 25, 2024
  • Equine_Asthma_Cell_Atlas Public

    Analysis scripts for the Equine Asthma Cell Atlas project at Molecular Precision Medicine research group, Uppsala University

    Molmed/Equine_Asthma_Cell_Atlas’s past year of commit activity
    R 0 0 0 0 Updated Nov 22, 2024
View all repositories

Top languages

Loading…

Most used topics

Loading…