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Double check of studies and IDs
- experiment types = ('metagenomics', 'metatrascriptomics', 'assembly')
- choose the highest pipeline version for run_id
Number of samples per biome (median)
0 root:Engineered:Wastewater 81
1 root:Engineered:Wastewater:Activated Sludge 12
2 root:Engineered:Wastewater:Activated Sludge, r... 70
3 root:Engineered:Wastewater:Industrial wastewater 30
4 root:Engineered:Wastewater:Industrial wastewat... 1
5 root:Engineered:Wastewater:Industrial wastewat... 14
6 root:Engineered:Wastewater:Nutrient removal:Bi... 6
7 root:Engineered:Wastewater:Nutrient removal:Di... 6
8 root:Engineered:Wastewater:Nutrient removal:Ni... 1
9 root:Engineered:Wastewater:Water and sludge 179
Value counts experiment_type:
metagenomic 985
assembly 530
metatranscriptomic 99
Value counts biomes
root:Engineered:Wastewater:Water and sludge 708
root:Engineered:Wastewater 497
root:Engineered:Wastewater:Activated Sludge 225
root:Engineered:Wastewater:Activated Sludge, root:Engineered:Wastewater:Industrial wastewater 70
root:Engineered:Wastewater:Industrial wastewater 67
root:Engineered:Wastewater:Industrial wastewater:Petrochemical 24
root:Engineered:Wastewater:Nutrient removal:Dissolved organics (anaerobic) 12
root:Engineered:Wastewater:Nutrient removal:Biological phosphorus removal:Activated sludge 8
root:Engineered:Wastewater:Industrial wastewater:Agricultural wastewater 2
root:Engineered:Wastewater:Nutrient removal:Nitrogen removal 1
- number of samples >= ***
- tot number of studies considered => ***
- tot number of samples considered => ***