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Ensure migration from google code and encourage migration from sourceforge #76

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cmungall opened this issue Aug 19, 2015 · 4 comments
Closed

Ensure migration from google code and encourage migration from sourceforge #76

cmungall opened this issue Aug 19, 2015 · 4 comments
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@cmungall @rvita
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attn: Operations Committee Issues pertinent to broad Foundry activities, such as policies and guidelines ontology metadata Issues related to ontology metadata specific ontology Issues related to a specific ontology; Consider using that ontology's tracker instead

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@cmungall
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$ grep code.goog ontology/*md
$ grep sourceforg ontology/*md

Some may be from obsolete ontologies, but even so best to have these migrated for posterity
@cmungall cmungall added ontology metadata Issues related to ontology metadata attn: Outreach WG Issues pertinent to outreach activities, such as user interactions and documentation labels Aug 19, 2015
cmungall added a commit that referenced this issue Aug 19, 2015
@cmungall
Updating code.google refs to point to sf. #76
44b4e53
cmungall added a commit that referenced this issue Aug 19, 2015
@cmungall
Updating IAO GC->GH. #76
06d7d9c
cmungall added a commit that referenced this issue Aug 19, 2015
@cmungall
Updating DRON GC->BB/Atlassian. #76
7d34583
@mcourtot
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mcourtot commented Sep 5, 2016

does anything remain to be done on this?

@cmungall
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cmungall commented Sep 9, 2016 

$ grep code.goog ontology/*md
ontology/cmf.md:homepage: https://code.google.com/p/craniomaxillofacial-ontology/
ontology/cvdo.md:homepage: https://code.google.com/p/cvdo/
ontology/cvdo.md:tracker: https://code.google.com/p/cvdo/issues/list
ontology/epo.md:homepage: https://code.google.com/p/epidemiology-ontology/
ontology/geo.md:homepage: https://code.google.com/p/ge-ontology/
ontology/ido.md:tracker: http://code.google.com/p/infectious-disease-ontology/issues/list
ontology/mirnao.md:homepage: http://code.google.com/p/mirna-ontology/
ontology/ogg.md:tracker: https://code.google.com/p/ogg/issues/list
ontology/ogi.md:homepage: https://code.google.com/p/ontology-for-genetic-interval/
ontology/ogi.md:tracker: https://code.google.com/p/ontology-for-genetic-interval/issues/list
ontology/ogms.md:homepage: http://code.google.com/p/ogms/
ontology/ogms.md:page: http://code.google.com/p/ogms/
ontology/ogsf.md:homepage: https://code.google.com/p/ogsf/
ontology/ogsf.md:tracker: https://code.google.com/p/ogsf/issues/list
ontology/omrse.md:page: http://code.google.com/p/omrse/

$ grep sourceforg ontology/*md
ontology/caro.md:  source_url: http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/caro/caro.obo
ontology/cdao.md:homepage: http://sourceforge.net/apps/mediawiki/cdao/index.php?title=Main_Page
ontology/cl.md:mailing_list: https://lists.sourceforge.net/lists/listinfo/obo-cell-type
ontology/ddanat.md:tracker: http://sourceforge.net/tracker/?group_id=76834&atid=974664
ontology/doid.md:DO wiki: http://diseaseontology.sourceforge.net/
ontology/fbsp.md:  source_url: http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/taxonomy/fly_taxonomy.obo
ontology/fma.md:tracker: https://sourceforge.net/p/obo/foundational-model-of-anatomy-fma-requests/
ontology/fypo.md:  source_url: https://sourceforge.net/p/pombase/code/HEAD/tree/phenotype_ontology/releases/latest/fypo.obo?format=raw
ontology/mamo.md:homepage: http://sourceforge.net/p/mamo-ontology/wiki/Home/
ontology/mamo.md:tracker: http://sourceforge.net/p/mamo-ontology/tickets/
ontology/mo.md:homepage: http://mged.sourceforge.net/ontologies/MGEDontology.php
ontology/mo.md:page: http://mged.sourceforge.net/software/downloads.php
ontology/ms.md:mailing_list: [email protected]
ontology/ms.md: * https://lists.sourceforge.net/lists/listinfo/psidev-ms-vocab
ontology/ncbitaxon.md:  email: [email protected]
ontology/ncbitaxon.md: * https://lists.sourceforge.net/lists/listinfo/obo-taxonomy
ontology/nmr.md:homepage: http://msi-ontology.sourceforge.net/
ontology/nmr.md:page: http://msi-ontology.sourceforge.net/ontology/NMR.owlDocument.doc
ontology/nmr.md:  source_url: https://msi-workgroups.svn.sourceforge.net/svnroot/msi-workgroups/ontology/NMR.owl
ontology/pr.md:tracker: http://sourceforge.net/tracker/?group_id=266825&atid=1135711
ontology/rex.md:  source_url: http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/physicochemical/rex.obo
ontology/ro.md:mailing_list: https://lists.sourceforge.net/lists/listinfo/obo-relations
ontology/sbo.md:tracker: https://sourceforge.net/p/sbo/term-request/
ontology/sep.md:  email: [email protected]
ontology/so.md:  email: [email protected]
ontology/spd.md:  source_url: http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/gross_anatomy/animal_gross_anatomy/spider/spider_comparative_biology.obo
ontology/spd.md:tracker: http://sourceforge.net/tracker/?group_id=76834&atid=977401
ontology/swo.md:  source_url: http://theswo.svn.sourceforge.net/viewvc/theswo/trunk/src/release/swoinowl/swo_merged/swo_merged.owl
ontology/symp.md:  source_url: https://sourceforge.net/p/diseaseontology/code/HEAD/tree/Symptom_Ontology/symptom_ontology.obo
ontology/symp.md:tracker: http://sourceforge.net/tracker/?func=add&group_id=79168&atid=555739
ontology/trans.md:homepage: http://diseaseontology.sourceforge.net/
ontology/trans.md:  source_url: https://sourceforge.net/p/diseaseontology/code/HEAD/tree/Transmission_Process_Ontology/transmission_process_ontology.obo
ontology/trans.md:tracker: http://sourceforge.net/tracker/?func=add&group_id=79168&atid=555739
ontology/tto.md:  source_url: http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/taxonomy/teleost_taxonomy.obo
ontology/tto.md:tracker: http://sourceforge.net/tracker/?group_id=76834&atid=1046550
ontology/uberon.md:mailing_list: https://lists.sourceforge.net/lists/listinfo/obo-anatomy
ontology/vo.md:tracker: http://sourceforge.net/tracker/?atid=1127137&group_id=255029&func=browse
ontology/vsao.md:  source_url: http://phenoscape.svn.sourceforge.net/svnroot/phenoscape/tags/vocab-releases/VSAO/vsao.obo

@selewis selewis added attn: Operations Committee Issues pertinent to broad Foundry activities, such as policies and guidelines specific ontology Issues related to a specific ontology; Consider using that ontology's tracker instead and removed attn: Outreach WG Issues pertinent to outreach activities, such as user interactions and documentation labels Oct 4, 2016
@cmungall cmungall mentioned this issue Dec 1, 2016
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@lschriml
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Chris -- has this been completed ?

@cmungall cmungall mentioned this issue Feb 6, 2018
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rvita added a commit that referenced this issue Mar 20, 2018
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Update omrse.md
0fda544 
added license information #34, updated homepage #76  as part of metadata updates
@rvita rvita mentioned this issue Mar 20, 2018
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@rvita rvita self-assigned this Mar 21, 2018
@rvita
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rvita commented Mar 21, 2018

updated homepages for several ontologies as part of metadata updates. this resulted in geo, omrse, hom, & mfmo being changed to github pages. Will continue to check for & change homepages from google code as remainder of ontologies are verified for metadata.

@cmungall cmungall mentioned this issue Aug 10, 2019
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attn: Operations Committee Issues pertinent to broad Foundry activities, such as policies and guidelines ontology metadata Issues related to ontology metadata specific ontology Issues related to a specific ontology; Consider using that ontology's tracker instead
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@cmungall @selewis @mcourtot @lschriml @rvita