Tweak info script

OpenSourceBrain · Jan 27, 2025 · dc7cde2 · dc7cde2
1 parent 13bbd8f
commit dc7cde2
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Showing 3 changed files with 23 additions and 6 deletions.
diff --git a/libraries/client/cached_info/osb_gh.json b/libraries/client/cached_info/osb_gh.json
@@ -209517,8 +209517,8 @@
         "name": "OSBv2",
         "node_id": "MDEwOlJlcG9zaXRvcnkyNDMzMTY0MTM=",
         "notifications_url": "https://api.github.com/repos/OpenSourceBrain/OSBv2/notifications{?since,all,participating}",
-        "open_issues": 129,
-        "open_issues_count": 129,
+        "open_issues": 130,
+        "open_issues_count": 130,
         "owner": {
             "avatar_url": "https://avatars.githubusercontent.com/u/1565478?v=4",
             "events_url": "https://api.github.com/users/OpenSourceBrain/events{/privacy}",
@@ -209549,7 +209549,7 @@
         },
         "private": false,
         "pulls_url": "https://api.github.com/repos/OpenSourceBrain/OSBv2/pulls{/number}",
-        "pushed_at": "2025-01-24T09:55:39Z",
+        "pushed_at": "2025-01-27T11:39:42Z",
         "releases_url": "https://api.github.com/repos/OpenSourceBrain/OSBv2/releases{/id}",
         "size": 50688,
         "ssh_url": "[email protected]:OpenSourceBrain/OSBv2.git",

diff --git a/libraries/client/cached_info/repos_v2dev.json b/libraries/client/cached_info/repos_v2dev.json
@@ -127654,11 +127654,19 @@
             "id": 2258,
             "name": "Izhikevich2004_SpikingNeurons_thresholdVariability",
             "repository_type": "biomodels",
-            "summary": "",
+            "summary": "<notes xmlns=\"http://www.sbml.org/sbml/level2/version4\">      <body xmlns=\"http://www.w3.org/1999/xhtml\">        <p>      This a model from the article:      <br />        <strong> Which model to use for cortical spiking neurons?</strong>        <br />Izhikevich EM.      <em>IEEE Trans Neural Netw.</em>2004 Sep;15(5):1063-70.      <a href=\"http://www.ncbi.nlm.nih.gov/pubmed/15484883\">15484883</a>,      <br />        <strong>Abstract:</strong>        <br />We discuss the biological plausibility and computational efficiency of some of the most useful models of spiking and bursting neurons. We compare their applicability to large-scale simulations of cortical neural networks.   </p>        <p>The model is according to the paper<i>Which Model to Use for Cortical Spiking Neurons?</i> Figure1(O) threshold variability has been reproduced by MathSBML. The ODE and the parameters values are taken  from the a paper <i>Simple Model of Spiking Neurons</i>The original format of the models are encoded in the MATLAB format existed in the ModelDB with Accession number 39948  <p>Figure1 are the simulation results of the same model with different choices of parameters and different stimulus function or events.a=0.03; b=0.25; c=-60;  d=4; V=-64;  u=b*V;</p>      </p>      <p>This model originates from BioModels Database: A Database of Annotated Published Models. It is copyright (c) 2005-2010 The BioModels Team.<br />For more information see the <a href=\"http://www.ebi.ac.uk/biomodels/legal.html\" target=\"_blank\">terms of use</a>.<br />To cite BioModels Database, please use <a href=\"http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&amp;pubmedid=16381960\" target=\"_blank\">Le Nov\u00e8re N., Bornstein B., Broicher A., Courtot M., Donizelli M., Dharuri H., Li L., Sauro H., Schilstra M., Shapiro B., Snoep J.L., Hucka M. (2006) BioModels Database: A Free, Centralized Database of Curated, Published, Quantitative Kinetic Models of Biochemical and Cellular Systems Nucleic Acids Res., 34: D689-D691.</a>    </p>  </body></notes>",
             "tags": [
                 {
                     "id": 6,
                     "tag": "excitability"
+                },
+                {
+                    "id": 2936,
+                    "tag": "BioModels"
+                },
+                {
+                    "id": 704,
+                    "tag": "SBML"
                 }
             ],
             "timestamp_created": "2025-01-22 10:51:14.014827+00:00",

diff --git a/libraries/client/info_all.sh b/libraries/client/info_all.sh
@@ -3,6 +3,12 @@ set -ex
 
 ## A script to refresh all the cached info json files
 
+quick=0
+
+if [[ ($# -eq 1) && ($1 == '-q') ]]; then
+    quick=1
+fi
+
 ruff format *.py
 ruff check  *.py
 
@@ -15,7 +21,10 @@ python osb_gh_info.py
 
 python loadddandi.py -dry
 
-python biomodels_info.py 
+if [ "$quick" == 0 ]; then
+
+    python biomodels_info.py 
 
-python modeldb_info.py
+    python modeldb_info.py
 
+fi