fix wf outputs

broadinstitute · Feb 15, 2025 · eb066d0 · eb066d0
1 parent f44849f
commit eb066d0
Showing 1 changed file with 12 additions and 4 deletions.
diff --git a/pipes/WDL/workflows/genbank_gather.wdl b/pipes/WDL/workflows/genbank_gather.wdl
@@ -27,10 +27,18 @@ workflow genbank_gather {
         File? submit_sqns_warnings_zip    = package_genbank_submissions.submit_sqns_warnings_zip
         Int   num_sqns_clean              = package_genbank_submissions.num_sqns_clean
         Int   num_sqns_warnings           = package_genbank_submissions.num_sqns_warnings
-        File? submit_flu_clean_zip        = package_genbank_submissions.submit_flu_clean_zip
-        File? submit_flu_warnings_zip     = package_genbank_submissions.submit_flu_warnings_zip
-        Int   num_flu_clean               = package_genbank_submissions.num_flu_clean
-        Int   num_flu_warnings            = package_genbank_submissions.num_flu_warnings
+        File? submit_fluA_clean_zip       = package_genbank_submissions.submit_fluA_clean_zip
+        File? submit_fluA_warnings_zip    = package_genbank_submissions.submit_fluA_warnings_zip
+        Int   num_fluA_clean              = package_genbank_submissions.num_fluA_clean
+        Int   num_fluA_warnings           = package_genbank_submissions.num_fluA_warnings
+        File? submit_fluB_clean_zip       = package_genbank_submissions.submit_fluB_clean_zip
+        File? submit_fluB_warnings_zip    = package_genbank_submissions.submit_fluB_warnings_zip
+        Int   num_fluB_clean              = package_genbank_submissions.num_fluB_clean
+        Int   num_fluB_warnings           = package_genbank_submissions.num_fluB_warnings
+        File? submit_fluC_clean_zip       = package_genbank_submissions.submit_fluC_clean_zip
+        File? submit_fluC_warnings_zip    = package_genbank_submissions.submit_fluC_warnings_zip
+        Int   num_fluC_clean              = package_genbank_submissions.num_fluC_clean
+        Int   num_fluC_warnings           = package_genbank_submissions.num_fluC_warnings
         File? submit_sc2_clean_zip        = package_genbank_submissions.submit_sc2_clean_zip
         File? submit_sc2_warnings_zip     = package_genbank_submissions.submit_sc2_warnings_zip
         Int   num_sc2_clean               = package_genbank_submissions.num_sc2_clean