BUG: fix newline handling (#59)

caporaso-lab · Jul 28, 2020 · 66e6913 · 66e6913
1 parent 1b0ad2b
commit 66e6913
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/genome_sampler/plugin_setup.py b/genome_sampler/plugin_setup.py
@@ -171,7 +171,7 @@ def _4(fmt: GISAIDDNAFASTAFormat) -> DNASequencesDirectoryFormat:
 
 @plugin.register_transformer
 def _5(fmt: VCFLikeMaskFormat) -> pd.DataFrame:
-    with io.StringIO(''.join(fmt.to_list())) as fh:
+    with io.StringIO('\n'.join(fmt.to_list())) as fh:
         df = pd.read_csv(fh, sep='\t')
     df = df.rename(columns={'#CHROM': 'CHROM'})
     return df