remove rtd environment file

caporaso-lab · Feb 13, 2025 · e06d492 · e06d492
1 parent c003653
commit e06d492
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Showing 3 changed files with 6 additions and 26 deletions.
diff --git a/.readthedocs.yaml b/.readthedocs.yaml
@@ -11,11 +11,14 @@ build:
     python: "mambaforge-latest"
   jobs:
     create_environment:
-      - conda env create -p .envs/ --file environment-files/readthedocs.yml
-      - ls .envs/bin/
+      - conda env create -p .env/ --file environment-files/genome-sampler-dev.yml
+      - conda install -p .env/ -c conda-forge nodejs
+      - conda run -p .env/ pip install 'q2doc@git+https://github.com/qiime2/q2doc@dev'
+      - conda run -p .env/ pip install 'jupyter-book==2.0.0a1'
+      - conda run -p .env/ pip install .
     build:
       html:
-        - PATH=$(pwd)/.envs/bin/:$PATH make html
+        - PATH=$(pwd)/.env/bin/:$PATH make html
         - mkdir -p $READTHEDOCS_OUTPUT
         - cp -a docs/_build/* $READTHEDOCS_OUTPUT/
 

diff --git a/...enome-sampler-qiime2-amplicon-2024.10.yml → environment-files/genome-sampler-dev.yml b/...enome-sampler-qiime2-amplicon-2024.10.yml → environment-files/genome-sampler-dev.yml
@@ -14,5 +14,3 @@ dependencies:
   - pyvcf
   - vsearch
   - pip
-  - pip:
-    - genome-sampler@git+https://github.com/caporaso-lab/genome-sampler.git@dev
diff --git a/environment-files/readthedocs.yml b/environment-files/readthedocs.yml
-Original file line number
+Diff line change
@@ Expand Up / @@ -14,5 +14,3 @@ dependencies: @@
       - pyvcf
       - vsearch
       - pip
-      - pip:
-        - genome-sampler@git+https://github.com/caporaso-lab/genome-sampler.git@dev