fix: check if patent is associated to compounds before inserting DBref

cheminfo · Feb 15, 2024 · 7a0b29c · 7a0b29c
1 parent e993d6c
commit 7a0b29c
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Showing 2 changed files with 7 additions and 8 deletions.
diff --git a/...ns/activesOrNaturals/utils/__test__/__snapshots__/aggregateActivesOrNaturals.test.js.snap b/...ns/activesOrNaturals/utils/__test__/__snapshots__/aggregateActivesOrNaturals.test.js.snap
@@ -144,18 +144,13 @@ exports[`Aggregation ActivesOrNaturals 1`] = `
     "nbActivities": 20,
     "nbMassSpectra": 0,
     "nbMolecules": 2,
-    "nbPatents": 1,
+    "nbPatents": 0,
     "nbPubmeds": 0,
     "nbTaxonomies": 1,
     "noStereoOCL": {
       "idCode": "ekTpA@@@LAEMGLn\\dTTRbRfLbteRrRTfbqbtRthdRjZFFfNnAQjjjjjjjfjjjjjijjh@@",
     },
-    "patents": [
-      {
-        "$id": "EP-2078065-A2",
-        "$ref": "patents",
-      },
-    ],
+    "patents": [],
     "taxonomies": [
       {
         "class": "Magnoliopsida",

diff --git a/docker/src/plugins/activesOrNaturals/utils/getCompoundsInfo.js b/docker/src/plugins/activesOrNaturals/utils/getCompoundsInfo.js
@@ -89,7 +89,11 @@ export default async function getCompoundsInfo(
       for (let patent of compoundsPatents) {
         let patentCursor = await patentsCollection.find({ _id: patent });
         let patentInfo = await patentCursor.next();
-        if (patentInfo) {
+        if (
+          patentInfo &&
+          patentInfo.data.title &&
+          patentInfo.data.nbCompounds > 0
+        ) {
           dbRefsPatents.push({ $ref: 'patents', $id: patentInfo._id });
         }
       }