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Support community filter on WF name (#310)
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* Add filter on workflow name

* Add more filter tags for microGalaxy
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@bebatut
bebatut authored Feb 17, 2025
1 parent b99ee84 commit 9494604
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21 changes: 21 additions & 0 deletions communities/microgalaxy/metadata/workflow_status.tsv
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Link Name Source Projects Creators Creation time Update time To keep Deprecated
https://workflowhub.eu/workflows/1225?version=1 clinicalmp-discovery/main WorkflowHub Intergalactic Workflow Commission (IWC) Subina Mehta 2024-12-10 2025-01-13 True False
https://workflowhub.eu/workflows/1219?version=1 clinicalmp-data-interpretation/main WorkflowHub Intergalactic Workflow Commission (IWC) GalaxyP 2024-11-26 2024-12-06 True False
https://workflowhub.eu/workflows/1218?version=1 clinicalmp-verification/main WorkflowHub Intergalactic Workflow Commission (IWC) Pratik Jagtap 2024-11-26 2024-12-06 True False
https://workflowhub.eu/workflows/1216?version=1 clinicalmp-database-generation/main WorkflowHub Intergalactic Workflow Commission (IWC) Subina Mehta 2024-11-23 2024-12-06 True False
https://workflowhub.eu/workflows/1177?version=1 clinicalmp-quantitation/main WorkflowHub Intergalactic Workflow Commission (IWC) GalaxyP 2024-10-07 2024-10-07 True False
https://workflowhub.eu/workflows/1043?version=7 bacterial-genome-assembly/main WorkflowHub Intergalactic Workflow Commission (IWC) Abromics None, Pierre Marin, Clea Siguret 2024-11-26 2024-11-26 True False
https://workflowhub.eu/workflows/1052?version=8 quality-and-contamination-control/main WorkflowHub Intergalactic Workflow Commission (IWC) ABRomics None, Pierre Marin, Clea Siguret 2024-11-23 2024-11-23 True False
https://workflowhub.eu/workflows/1090?version=2 qiime2-III-VI-downsteam/QIIME2-III-V-Phylogeny-Rarefaction-Taxonomic-Analysis WorkflowHub Intergalactic Workflow Commission (IWC) Debjyoti Ghosh 2024-11-26 2024-12-06 True False
https://workflowhub.eu/workflows/1063?version=3 allele-based-pathogen-identification/main WorkflowHub Intergalactic Workflow Commission (IWC) Engy Nasr, Bérénice Batut, Paul Zierep 2024-10-30 2024-10-31 True False
https://workflowhub.eu/workflows/1062?version=1 gene-based-pathogen-identification/main WorkflowHub Intergalactic Workflow Commission (IWC) Engy Nasr, Bérénice Batut, Paul Zierep 2024-06-26 2024-07-15 True False
https://workflowhub.eu/workflows/1060?version=1 pathogen-detection-pathogfair-samples-aggregation-and-visualisation/main WorkflowHub Intergalactic Workflow Commission (IWC) Engy Nasr, Bérénice Batut, Paul Zierep 2024-06-26 2024-07-15 True False
https://workflowhub.eu/workflows/1059?version=1 taxonomy-profiling-and-visualization-with-krona/main WorkflowHub Intergalactic Workflow Commission (IWC) Engy Nasr, Bérénice Batut, Paul Zierep 2024-06-26 2024-07-15 True False
https://workflowhub.eu/workflows/1050?version=9 bacterial_genome_annotation/main WorkflowHub Intergalactic Workflow Commission (IWC) ABRomics None, Pierre Marin, Clea Siguret 2024-10-26 2024-10-26 True False
https://workflowhub.eu/workflows/1049?version=7 amr_gene_detection/main WorkflowHub Intergalactic Workflow Commission (IWC) ABRomics None, Pierre Marin, Clea Siguret 2024-10-26 2024-10-27 True False
https://workflowhub.eu/workflows/790?version=2 dada2/main WorkflowHub Intergalactic Workflow Commission (IWC) Matthias Bernt 2024-05-30 2024-06-02 True False
https://workflowhub.eu/workflows/439?version=2 pox-virus-amplicon/main WorkflowHub Intergalactic Workflow Commission (IWC) Viktoria Isabel Schwarz, Wolfgang Maier 2024-06-22 2024-06-22 True False
https://workflowhub.eu/workflows/749?version=1 Refining Genome Annotations with Apollo (prokaryotes) WorkflowHub EuroScienceGateway Anthony Bretaudeau 2024-02-14 2024-02-15 True False
https://workflowhub.eu/workflows/406?version=1 GTN Training - Antibiotic Resistance Detection WorkflowHub Galaxy Training Network Saskia Hiltemann, Willem de Koning 2022-11-24 2023-02-13 True False
https://workflowhub.eu/workflows/103?version=1 3: Plant virus exploration WorkflowHub Integrated and Urban Plant Pathology Laboratory 2021-02-04 2023-02-13 True False
https://workflowhub.eu/workflows/102?version=1 2: Plant virus confirmation WorkflowHub Integrated and Urban Plant Pathology Laboratory 2021-02-04 2023-02-13 True False
Expand All @@ -17,10 +29,17 @@ https://workflowhub.eu/workflows/651?version=1 Workflow 5: OTU Clustering [16S M
https://workflowhub.eu/workflows/650?version=1 Workflow 3: Classification [Galaxy Training: 16S Microbial Analysis With Mothur] WorkflowHub QCIF Bioinformatics Saskia Hiltemann, Bérénice Batut, Dave Clements, Ahmed Mehdi 2023-11-09 2023-11-09 True False
https://workflowhub.eu/workflows/648?version=1 Workflow 1: Further Quality Control [16S Microbial Analysis With Mothur] WorkflowHub QCIF Bioinformatics Saskia Hiltemann, Bérénice Batut, Dave Clements, Ahmed Mehdi 2023-11-09 2023-11-09 True False
https://workflowhub.eu/workflows/649?version=1 Workflow 2: Data Cleaning And Chimera Removal [16S Microbial Analysis With Mothur] WorkflowHub QCIF Bioinformatics Saskia Hiltemann, Bérénice Batut, Dave Clements, Ahmed Mehdi 2023-11-09 2023-11-09 True False
https://workflowhub.eu/workflows/1035?version=1 TB Variant Analysis v1.0 WorkflowHub SANBI Pathogen Bioinformatics Peter van Heusden 2024-06-07 2024-06-12 True False
https://workflowhub.eu/workflows/407?version=1 Workflow 3: AMR - SeqSero2/SISTR WorkflowHub Seq4AMR 2022-11-24 2024-09-09 True False
https://workflowhub.eu/workflows/644?version=1 Workflow 2: Sciensano WorkflowHub Seq4AMR 2023-11-07 2024-09-09 True False
https://workflowhub.eu/workflows/470?version=1 Workflow 4: Staramr WorkflowHub Seq4AMR 2023-05-11 2024-09-09 True False
https://workflowhub.eu/workflows/634?version=1 Workflow 1: AbritAMR WorkflowHub Seq4AMR 2023-10-31 2024-09-09 True False
https://workflowhub.eu/workflows/1189?version=2 AMR-Pathfinder WorkflowHub Seq4AMR, ErasmusMC Clinical Bioinformatics Helena Rasche, Dennis Dollée, Birgit Rijvers 2024-11-14 2024-12-24 True False
https://dev.workflowhub.eu/workflows/1380?version=1 Query a metaplasmidome database to identify and annotate plasmids in metagenomes dev.WorkflowHub Galaxy Training Network 2025-01-13 2025-01-20 True False
https://dev.workflowhub.eu/workflows/1366?version=1 Workflow for Identifying MF from ITS2 sequencing using LotuS2 - tutorial example run' dev.WorkflowHub Galaxy Training Network 2024-10-07 2024-10-07 True False
https://dev.workflowhub.eu/workflows/1349?version=1 Calculating diversity from microbiome taxonomic data dev.WorkflowHub Galaxy Training Network 2024-08-12 2024-10-07 True False
https://dev.workflowhub.eu/workflows/1344?version=1 Quality and contamination control in bacterial isolate using Illumina MiSeq Data dev.WorkflowHub Galaxy Training Network 2024-07-15 2024-10-07 True False
https://dev.workflowhub.eu/workflows/1217?version=2 Checking expected species and contamination in bacterial isolate dev.WorkflowHub Galaxy Training Network 2024-07-16 2024-10-07 True False
https://dev.workflowhub.eu/workflows/1133?version=1 Workflow 5: OTU Clustering [Galaxy Training: 16S Microbial Analysis With Mothur] dev.WorkflowHub Galaxy Training Network 2024-06-25 2024-10-07 True False
https://dev.workflowhub.eu/workflows/1129?version=1 Workflow 6: Alpha Diversity [Galaxy Training: 16S Microbial Analysis With Mothur] dev.WorkflowHub Galaxy Training Network 2024-06-25 2024-10-07 True False
https://dev.workflowhub.eu/workflows/1125?version=1 Workflow 4: Mock OTU Clustering [Galaxy Training: 16S Microbial Analysis With Mothur] dev.WorkflowHub Galaxy Training Network 2024-06-25 2024-10-07 True False
Expand All @@ -33,7 +52,9 @@ https://dev.workflowhub.eu/workflows/1101?version=1 Training: 16S rRNA Sequencin
https://dev.workflowhub.eu/workflows/1097?version=1 Identification of the micro-organisms in a beer using Nanopore sequencing dev.WorkflowHub Galaxy Training Network 2024-06-25 2024-10-07 True False
https://dev.workflowhub.eu/workflows/1095?version=1 Taxonomic Profiling and Visualization of Metagenomic Data dev.WorkflowHub Galaxy Training Network 2024-06-25 2024-10-07 True False
https://dev.workflowhub.eu/workflows/1080?version=1 Workflow 3: Functional Information (quick) dev.WorkflowHub Galaxy Training Network 2024-06-25 2024-10-07 True False
https://dev.workflowhub.eu/workflows/1078?version=1 pox-virus-tiled-amplicon-ref-masking dev.WorkflowHub Galaxy Training Network 2024-06-25 2024-10-07 True False
https://dev.workflowhub.eu/workflows/1070?version=1 Amplicon Tutorial dev.WorkflowHub Galaxy Training Network 2024-06-25 2024-10-07 True False
https://dev.workflowhub.eu/workflows/1069?version=2 TB Variant Analysis v1.0 dev.WorkflowHub Galaxy Training Network 2024-07-16 2024-10-07 True False
https://dev.workflowhub.eu/workflows/1067?version=1 "WGS Part In ""Analyses Of Metagenomics Data - The Global Picture""" dev.WorkflowHub Galaxy Training Network 2024-06-25 2024-10-07 True False
https://dev.workflowhub.eu/workflows/1064?version=1 Training: 16S rRNA Analysis with Nanopore Sequencing Reads dev.WorkflowHub Galaxy Training Network 2024-06-25 2024-10-07 True False
https://dev.workflowhub.eu/workflows/1060?version=1 Workflow 3: Classification [Galaxy Training: 16S Microbial Analysis With Mothur] dev.WorkflowHub Galaxy Training Network 2024-06-25 2024-10-07 True False
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12 changes: 11 additions & 1 deletion communities/microgalaxy/metadata/workflow_tags
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Expand Up @@ -15,4 +15,14 @@ workflowhub:
- metatranscriptomics
- microbiome
- pathogfair
- virology
- virology
- antimicrobial resistance
- pathogen
- name:amplicon
- clinicalmp
- Sciensano
- AbritAMR
- Taxonomic
- taxonomy-profiling
- prokaryote
- tuberculosis
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