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a little cleaning for #82
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kltm committed Apr 5, 2022
1 parent e8ea79b commit a127d55
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions Makefile
Original file line number Diff line number Diff line change
Expand Up @@ -30,7 +30,7 @@ neo.obo: $(OBO_SRCS) $(IMPORTS)
owltools --create-ontology http://purl.obolibrary.org/obo/go/noctua/neo.owl $^ --merge-support-ontologies -o -f obo $@.tmp && grep -v ^owl-axioms $@.tmp > $@

## datasets.json is created as a throwaway in the NEO versions of the
## pipeline and is based on the go-sitr master data.
## pipeline and is based on the go-site master data.
datasets.json: trigger
wget http://s3.amazonaws.com/go-build/metadata/datasets.json -O $@ && touch $@

Expand Down Expand Up @@ -61,7 +61,7 @@ target/neo-goa_sars-cov-2.obo: mirror/goa_sars-cov-2.gpi.gz
mirror/uniprot_reviewed.gpi.gz: datasets.json
wget --no-check-certificate http://ftp.ebi.ac.uk/pub/contrib/goa/uniprot_reviewed.gpi.gz -O mirror/uniprot_reviewed.gpi.gz.tmp
gzip -dc mirror/uniprot_reviewed.gpi.gz.tmp > mirror/uniprot_reviewed.gpi.tmp
perl ./filter.pl -v --metadata ./datasets.json --input mirror/uniprot_reviewed.gpi.tmp > mirror/filtered_uniprot_reviewed.gpi.tmp
perl filter.pl -v --metadata datasets.json --input mirror/uniprot_reviewed.gpi.tmp > mirror/filtered_uniprot_reviewed.gpi.tmp
gzip -c mirror/filtered_uniprot_reviewed.gpi.tmp > mirror/filtered_uniprot_reviewed.gpi.gz.tmp
mv mirror/filtered_uniprot_reviewed.gpi.gz.tmp mirror/uniprot_reviewed.gpi.gz
target/neo-uniprot_reviewed.obo: mirror/uniprot_reviewed.gpi.gz
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