Make official v2 release + gh action for docker image

[korikuzma]

@acoffman and @susannasiebert agreed that we should just make the official v2 release and release molecular profiles separately

Note: This assumes the GH release tag does not include the v prefix. For instance, use 1.0.0 rather than v1.0.1

[korikuzma]

Added work for creating docker images. I didn't pin a version in the Dockerfile. Wasn't sure the best way to handle this. I can revert back to manually changing or think of an alternate way without having to change the version in 2 places.

I think we'll also want to set the dockerhub secrets in the repo to use the griffithlab user or a different user?

[susannasiebert]

Added work for creating docker images. I didn't pin a version in the Dockerfile. Wasn't sure the best way to handle this. I can revert back to manually changing or think of an alternate way without having to change the version in 2 places.

I think this is fine although we should monitor this in practice. Sometimes pypi's registry gets backed up and even though a new release is live, pip isn't aware of the new version so an old version would get installed/released in the Docker image.

I think we'll also want to set the dockerhub secrets in the repo to use the griffithlab user or a different user?

That is a good question. I haven't set up a github action for this before so I'm not entirely sure. Let me ask some of my colleagues who might have more info.

[korikuzma]

@susannasiebert Added these lines to install specific version based on the GH release tag. Exposing GH actions env var to Dockerfile was tricky. This was one solution that worked. If you know of an alternate way, we can do that.

[korikuzma]

I think this is fine although we should monitor this in practice. Sometimes pypi's registry gets backed up and even though a new release is live, pip isn't aware of the new version so an old version would get installed/released in the Docker image.

@susannasiebert I can see if there's a way to check that the version exists before starting docker build action.

[susannasiebert]

+1