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Circleator v1.0.0
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@jonathancrabtree jonathancrabtree released this 13 Jan 17:10
· 30 commits to master since this release
1.0.0
8a61b16

1.0.0 (Jan 13 2016)

  • Add parser for clc_find_variations SNP/indel-finding tool.
  • Add feat-tag-gt, feat-tag-gte, feat-tag-lt, feat-tag-lte. Previously only
    lte (less than or equal to) and gte (greater than or equal to) were supported, via
    feat-tag-min-value and feat-tag-max-value.
  • Add overlapping-feat-track option.
  • Add variant-base-histogram glyph
  • Add configuration files and data for figures from 2014 Bioinformatics paper.
  • Add utilities for extracting and log-scaling summarized coverage data from BAM files.
  • Fix for possible integer overflow in samtools/bam_get_coverage: replaced int with long.
  • Make regression tests less sensitive to platform and SVG module version [Issue #21].
  • Make regression tests use the correct Perl executable [Issue #26].
  • Tested on more recent Perl versions (5.18.2, 5.22.1) and Mac OS X 10.11.2 (El Capitan)
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