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Windows Subsystem for Linux (WSL) FAQ #264

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Windows Subsystem for Linux (WSL) FAQ #264

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Windows Subsystem for Linux (WSL) FAQ
qqgg231 Dec 29, 2019
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Update README.md
qqgg231 Dec 29, 2019
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Expand Up @@ -164,6 +164,13 @@ post-processing helps to reduce false mappings caused by reads from the
diverged part of ALT contigs and also enables HLA typing. It is recommended to
run the post-processing script.

#### <a name="postalt"></a>8. Can I install BWA-MEM on Windows Subsystem for Linux (WSL)?

Yes, but if your WSL distribution is Ubuntu, additional step is needed before install:
```` sudo apt-get install build-essential make libz-dev -y ````

If you want to also install samtools on WSL see [this instruction][19]



[1]: http://en.wikipedia.org/wiki/GNU_General_Public_License
Expand All @@ -184,3 +191,4 @@ run the post-processing script.
[16]: ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Homo_sapiens/GRCh38/seqs_for_alignment_pipelines/
[17]: http://sourceforge.net/projects/bio-bwa/files/bwakit/
[18]: https://github.com/lh3/bwa/blob/master/README-alt.md
[19]: https://gist.github.com/qqgg231/2224ac21510b980b2b4faf41a824e6d4