Fix process shell for Nextflow edge #653

Job	Run time
Run pipeline with test data (24.04.2 \| docker \| test)	3m 51s
Run pipeline with test data (24.04.2 \| docker \| test_alphafold2_split)	4m 4s
Run pipeline with test data (24.04.2 \| docker \| test_alphafold2_download)	5m 15s
Run pipeline with test data (24.04.2 \| docker \| test_colabfold_local)	6m 3s
Run pipeline with test data (24.04.2 \| docker \| test_colabfold_webserver)	3m 31s
Run pipeline with test data (24.04.2 \| docker \| test_colabfold_download)	4m 0s
Run pipeline with test data (24.04.2 \| docker \| test_esmfold)	5m 59s
Run pipeline with test data (24.04.2 \| docker \| test_split_fasta)	4m 1s
Run pipeline with test data (latest-everything \| docker \| test)	3m 55s
Run pipeline with test data (latest-everything \| docker \| test_alphafold2_split)	6m 1s
Run pipeline with test data (latest-everything \| docker \| test_alphafold2_download)	5m 3s
Run pipeline with test data (latest-everything \| docker \| test_colabfold_local)	4m 55s
Run pipeline with test data (latest-everything \| docker \| test_colabfold_webserver)	3m 41s
Run pipeline with test data (latest-everything \| docker \| test_colabfold_download)	5m 23s
Run pipeline with test data (latest-everything \| docker \| test_esmfold)	4m 6s
Run pipeline with test data (latest-everything \| docker \| test_split_fasta)	4m 14s
	1h 14m 2s

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