nf-core CI

Add error to modules that can not use conda #344

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Triggered via pull request March 22, 2024 17:22

opened #138

JoseEspinosa:fixes

Status Failure

Total duration 2m 58s

Artifacts –

ci.yml

on: pull_request

Test alphafold2 split workflow

Test Colabfold local workflow

Test Colabfold webserver workflow

Matrix: Run pipeline with test data

Annotations

5 errors and 7 warnings

Test alphafold2 split workflow

Process completed with exit code 1.

Test Colabfold local workflow

Process completed with exit code 1.

Test Colabfold webserver workflow

Process completed with exit code 1.

Run pipeline with test data (latest-everything)

Process completed with exit code 1.

Run pipeline with test data (23.04.0)

The job was canceled because "latest-everything" failed.

Test alphafold2 split workflow

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Test alphafold2 split workflow

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Test Colabfold local workflow

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Test Colabfold local workflow

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Test Colabfold webserver workflow

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Test Colabfold webserver workflow

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Run pipeline with test data (latest-everything)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.