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CHORES: Update all modules #2203

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CHORES: Update all modules

CHORES: Update all modules #2203

Run time

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Job Run time
Test HISAT2 with workflow parameters (--skip_qc)
6m 4s
Test HISAT2 with workflow parameters (--skip_qc)
6m 4s
Test HISAT2 with workflow parameters (--skip_qc)
6m 4s
Test STAR RSEM with workflow parameters (--skip_qc)
7m 21s
Test STAR RSEM with workflow parameters (--skip_qc)
7m 21s
Test STAR RSEM with workflow parameters (--skip_qc)
7m 21s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_qc)
7m 43s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_qc)
7m 43s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_qc)
7m 43s
Test HISAT2 with workflow parameters (--hisat2_index false)
8m 30s
Test HISAT2 with workflow parameters (--hisat2_index false)
8m 30s
Test HISAT2 with workflow parameters (--hisat2_index false)
8m 30s
Test STAR RSEM with workflow parameters (--rsem_index false)
9m 22s
Test STAR RSEM with workflow parameters (--rsem_index false)
9m 22s
Test STAR RSEM with workflow parameters (--rsem_index false)
9m 22s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_alignment --skip_pse...
3m 50s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_alignment --skip_pse...
3m 50s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_alignment --skip_pse...
3m 50s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --salmon_index false --tran...
10m 44s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --salmon_index false --tran...
10m 44s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --salmon_index false --tran...
10m 44s
Run pipeline with test data (23.04.0)
11m 0s
Run pipeline with test data (23.04.0)
11m 0s
Run pipeline with test data (23.04.0)
11m 0s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_qc)
7m 49s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_qc)
7m 49s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_qc)
7m 49s
Test STAR Salmon with workflow parameters (--skip_qc)
6m 37s
Test STAR Salmon with workflow parameters (--skip_qc)
6m 50s
Test STAR Salmon with workflow parameters (--skip_qc)
7m 37s
Run pipeline with test data (latest-everything)
10m 31s
Run pipeline with test data (latest-everything)
10m 31s
Run pipeline with test data (latest-everything)
10m 31s
Test STAR Salmon with workflow parameters (--skip_trimming)
4m 15s
Test STAR Salmon with workflow parameters (--skip_trimming)
6m 50s
Test STAR Salmon with workflow parameters (--skip_trimming)
10m 6s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_alignment --skip_p...
3m 37s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_alignment --skip_p...
3m 37s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_alignment --skip_p...
3m 37s
Test STAR Salmon with workflow parameters (--gtf false)
6m 40s
Test STAR Salmon with workflow parameters (--gtf false)
6m 53s
Test STAR Salmon with workflow parameters (--gtf false)
10m 49s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --kallisto_index false --...
10m 44s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --kallisto_index false --...
10m 44s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --kallisto_index false --...
10m 44s
Test STAR Salmon with workflow parameters (--star_index false)
6m 12s
Test STAR Salmon with workflow parameters (--star_index false)
6m 51s
Test STAR Salmon with workflow parameters (--star_index false)
10m 28s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
6m 7s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
6m 52s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
10m 24s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
6m 41s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
6m 51s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
10m 0s
Test STAR Salmon with workflow parameters (--with_umi)
4m 22s
Test STAR Salmon with workflow parameters (--with_umi)
6m 50s
Test STAR Salmon with workflow parameters (--with_umi)
11m 13s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
4m 19s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
6m 51s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
11m 5s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
6m 22s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
6m 33s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
18m 16s
Test STAR Salmon with workflow parameters (--bam_csi_index)
6m 42s
Test STAR Salmon with workflow parameters (--bam_csi_index)
6m 51s
Test STAR Salmon with workflow parameters (--bam_csi_index)
10m 22s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
6m 39s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
6m 50s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
10m 30s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
6m 42s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
6m 53s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
10m 36s
Test STAR Salmon with workflow parameters (--trimmer fastp)
6m 3s
Test STAR Salmon with workflow parameters (--trimmer fastp)
6m 50s
Test STAR Salmon with workflow parameters (--trimmer fastp)
9m 57s
9h 59m 34s