Merge pull request #381 from maxulysse/dev_cf_ploidy

fix: cf_ploidy type parameter
nf-core · May 27, 2021 · 6bd689a · 6bd689a
2 parents 672a28b + 8951221
commit 6bd689a
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -52,7 +52,7 @@ params {
   cf_coeff = 0.05                    // default value for Control-FREEC
   cf_contamination = null            // by default not specified in Control-FREEC
   cf_contamination_adjustment = null // by default we are not using this in Control-FREEC
-  cf_ploidy = "2"                    // you can use 2,3,4
+  cf_ploidy = 2                      // you can use 2,3,4
   cf_window = null                   // by default we are not using this in Control-FREEC
   generate_gvcf = null // g.vcf are not produced by HaplotypeCaller by default
   no_strelka_bp = null // Strelka will use Manta candidateSmallIndels if available

diff --git a/nextflow_schema.json b/nextflow_schema.json
@@ -295,7 +295,7 @@
                     "description": "Design known contamination value for Control-FREEC"
                 },
                 "cf_ploidy": {
-                    "type": "string",
+                    "type": "number",
                     "default": "2",
                     "fa_icon": "fas fa-wrench",
                     "description": "Overwrite Control-FREEC ploidy"